View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_high_33 (Length: 283)
Name: NF1852_high_33
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 9716516 - 9716309
Alignment:
| Q |
25 |
caactaattattattattatcttcctaacatcaaaagttattgacctttt-acaaaaagtttaatggattatgaatatcagtgttgtctcacctaagtcc |
123 |
Q |
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| T |
9716516 |
caactaattattattattatcttcctaacatcaaaagttgttgaactttttacaaagagtttaatggattatgaatat-agtgttgtcgcacctaagtcc |
9716418 |
T |
|
| Q |
124 |
atgatggacatcaagggtaaacatgattaactaatatcatcttcttcattccctcgtttaactctaagcatcttccattcttgcatcttgtgcttttaat |
223 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
9716417 |
atgatggacattaagggtaaacatgattaactaatatcatgttcttcattctctcgtttaactctaagcatcttccattcttgtatcttatgcttttaat |
9716318 |
T |
|
| Q |
224 |
tactctcga |
232 |
Q |
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||||||||| |
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| T |
9716317 |
tactctcga |
9716309 |
T |
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