View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_high_34 (Length: 270)
Name: NF1852_high_34
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 54880816 - 54881066
Alignment:
| Q |
1 |
tgtgatgtgtgtgagaaagctgaggctactatgttctgtccttcagatgaagctgctctttgccatggatgtgatcataccatccaccgtgccaacaagc |
100 |
Q |
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| T |
54880816 |
tgtgatgtgtgtgagaaagctgaggctactatgttctgtccttcagatgaagctgctctttgccatggatgtgatcataccatccaccgtgccaacaagc |
54880915 |
T |
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| Q |
101 |
tcgcaaccaaacacactcgtttttctcttgttcacctcaactccaaagactaccctctttgtgatatctgtcaagtatgaatacaccgtcgcatctggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54880916 |
tcgcaaccaaacacactcgtttttctcttgttcacctcaactccaaagactaccctctttgtgatatctgtcaagtatgaatacaccgtcgcatctggat |
54881015 |
T |
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| Q |
201 |
cttttaatattttaaagaatctcatgagtcagatgtcactaatgcaaccac |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
54881016 |
cttttaatattttaaagaatctcatgagtcagatgtgactaattcaaccac |
54881066 |
T |
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