View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_high_43 (Length: 247)
Name: NF1852_high_43
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 24385973 - 24386191
Alignment:
| Q |
19 |
agaactcaacaagcacaaacacataaatgaagtccttcggattgttcgatggctttctgtcgatgaggtaagacaacattcttcaagcacacaataaggt |
118 |
Q |
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| T |
24385973 |
agaactcaacaagcacaaacacataaatgaagtccttcggattgttcgatggctttctgtcgatgaggtaagacaacattcttcaagcacacaataaggt |
24386072 |
T |
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| Q |
119 |
agattggttgtgagaatatagcctactatcttttattattattcaaaactttgttgatagttaaatcaagcctaacaagtatgaaggttgaagacaatga |
218 |
Q |
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| T |
24386073 |
agattggttgtgagaatatagcctactatcttttattattattcaaaactttgttgatagttaaatcaagcctaacaagtatgaaggttgaagacaatga |
24386172 |
T |
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| Q |
219 |
agaactttggtaacctttg |
237 |
Q |
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| T |
24386173 |
agaactttggtaacctttg |
24386191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 16153393 - 16153239
Alignment:
| Q |
76 |
tgtcgatgaggtaagacaacattcttcaagcacacaataaggtagattggttgtgagaatatagcctactatcttttattattattcaaaactttgttga |
175 |
Q |
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| T |
16153393 |
tgtccatgagataagacaactttcttcaagcccacaataaggtagattggttgtgagaatataatctactatcttttattattattcaaaactttgttga |
16153294 |
T |
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| Q |
176 |
tagttaaatcaagcctaacaagtatgaaggttgaagacaatgaagaactttggtaa |
231 |
Q |
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| T |
16153293 |
tagttaaatc-agcctaacaagtatgaaaattgaagacaatgaagaactttggtaa |
16153239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 16158338 - 16158249
Alignment:
| Q |
144 |
ctatcttttattattat--tcaaaactttgttgatagttaaatcaagcctaacaagtatgaaggttgaagacaatgaagaactttggtaa |
231 |
Q |
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| T |
16158338 |
ctatcttttattattatattaaaaactttgttgatagttaaatcaagcctaacaagtatgaaaattgaaaacaatgaacaactttggtaa |
16158249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 48954666 - 48954630
Alignment:
| Q |
188 |
gcctaacaagtatgaaggttgaagacaatgaagaact |
224 |
Q |
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| T |
48954666 |
gcctaacaagtatgaagattgaagacaacgaagaact |
48954630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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