View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_high_51 (Length: 224)
Name: NF1852_high_51
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_51 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 43328890 - 43329037
Alignment:
| Q |
74 |
tattcttgttcgttttgacaaaaagttggaattcacaggacatcttaacttaatatacctattatcaattccccaccgtgagtaaattgctgtccaagct |
173 |
Q |
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| T |
43328890 |
tattcttgttcgtattgacaaaaagttggaattcacaggacat---aacttaatatacctattatcaattccccaccgtgagtaaattgctgtccaagct |
43328986 |
T |
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| Q |
174 |
ttgtatgaaaaataataacataaaataggatcttattctgacatactatcc |
224 |
Q |
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| T |
43328987 |
ttgtatgaaaaataataacataaaataggatcttattctgacatactatcc |
43329037 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 43328624 - 43328702
Alignment:
| Q |
1 |
aagaagatgatctccaaattcacgatgtgacacaaaatgttgttgattgcctttggtacttatctcacatctttattct |
79 |
Q |
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| T |
43328624 |
aagaagatgatctccaaattcacaatgtgacacaaaatgttgttgattgcctttggtacttatctcacatctttattct |
43328702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 25781346 - 25781389
Alignment:
| Q |
67 |
acatctttattcttgttcgttttgacaaaaagttggaattcaca |
110 |
Q |
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| T |
25781346 |
acatctttattcttgttggttttgacaaagagttcgaattcaca |
25781389 |
T |
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