View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1852_high_54 (Length: 213)
Name: NF1852_high_54
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_54 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 43329037 - 43329173
Alignment:
| Q |
1 |
ctccactggttaggtggaaataccttaaaggcttcctttatcatataaatactaagcagacagtatgctttaatcaatacaatgcacatataacaaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43329037 |
ctccactggttaggtggaaataccttaaaggcttcctttatcatataaatactaagcagacagtatactttaatcaatacaatgcacatataacaaatta |
43329136 |
T |
|
| Q |
101 |
attcaagatgatgagatactaacttaatcatgcctgg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43329137 |
attcaagatgatgagatactaacttaatcatgcctgg |
43329173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 213
Target Start/End: Original strand, 43329253 - 43329284
Alignment:
| Q |
182 |
ctcatactagagcagagacaataaaggagaac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
43329253 |
ctcatactagagcagagacaataaaggagaac |
43329284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University