View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_high_6 (Length: 535)
Name: NF1852_high_6
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_6 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 12 - 511
Target Start/End: Complemental strand, 28255 - 27756
Alignment:
| Q |
12 |
catcatcttaaaccgaagtgaaattcattgggagagcgaagagcacggaaagcatgatcaattggacgacatcagctttgaggtttataatttgttgacc |
111 |
Q |
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| T |
28255 |
catcatcttaaaccgaagtgaaattcattgggagagcgaagagcacggaaagcatgatcaattggacgacatcagctttgaggtttataatttgttgacc |
28156 |
T |
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| Q |
112 |
aacttcagttttcttgtttataattcgtcaaacaaattcagttcacctgaaaaacggaacagatcagtaattcgtaacgaacagtataacaataaaagat |
211 |
Q |
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| T |
28155 |
aacttcagttttcttgtttataattcgtcaaacaaattcagttcacctgaaaaacggaacagatcagtaattcgtaacgaacagtataacaataaaagat |
28056 |
T |
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| Q |
212 |
tgttcctcaattcgacaggtgtgatacagtgggtggaagatgatttgccagttatatggaagcagccaagaagcaaatgtttaacatataatgcttgtgg |
311 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28055 |
tgttcctcaattccacaggtgtgatacagtgggtggaagatgatttgctagttatatggaagcagccaagaagcaaatgtttaacatataatgcttgtgg |
27956 |
T |
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| Q |
312 |
aaactttgctagctgtaatgacgatgatagcgtttgcaaatgtttaccaggattctacaatgataaccagggagaggaagattcttcacgacattgtacg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27955 |
aaactttgctagctgtaatgacgatgatagcgtttgcaaatgtttaccaggattctacaatgataaccagggagaggaagattcttcacgacattgtacg |
27856 |
T |
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| Q |
412 |
aggagaaaaacaacattctgttctgaaaatgacatgaagttcttgaacttgaccatgattaaaacaggaaagccagataaaaaggcaaccgtggaatctc |
511 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |
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| T |
27855 |
aggagaaaaacaacattctgtactgaaaatgacacgaagttcttgaacttgaccatgattaaaacaggaaggccagatataaaggtaaccgtggaatctc |
27756 |
T |
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