View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_high_7 (Length: 509)
Name: NF1852_high_7
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 116 - 392
Target Start/End: Original strand, 8712594 - 8712866
Alignment:
| Q |
116 |
tttcgaacacatgataagacttcttttctttcattcccttataaattaatgatcttgtttccacattgatcatgggtttagcggttgcaagaaaagatct |
215 |
Q |
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| T |
8712594 |
tttcgaacacatgataagacttcttttctttcattcccttataaattaattatcttgtttccacattgatcatgggtttagcggttgcaagaaaagatct |
8712693 |
T |
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| Q |
216 |
ttcaaggataggtggacattttcgatcttaattcttgcatatccaagattacaaaatctgtcaaaaagataacttagtttacttttaccatcaagaattc |
315 |
Q |
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| T |
8712694 |
ttcaaggataggtggacattttcgatctt----cttgcatatccaagattacaaaatctgtcaaaaagataacttagtttacttttaccatcaagaattc |
8712789 |
T |
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| Q |
316 |
tactatgccataaggaaatttgattgtaccatctgccaaggtgagatttatgtttgatggtttcatcttcacctttt |
392 |
Q |
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| T |
8712790 |
tactatgccataaggaaatttgattgtaccatctgccaaggtgagatttatgtttggtggtttcatcttcacctttt |
8712866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 116 - 392
Target Start/End: Original strand, 9064481 - 9064753
Alignment:
| Q |
116 |
tttcgaacacatgataagacttcttttctttcattcccttataaattaatgatcttgtttccacattgatcatgggtttagcggttgcaagaaaagatct |
215 |
Q |
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| T |
9064481 |
tttcgaacacatgataagacttcttttctttcattcccttataaattaattatcttgtttccacattgatcatgggtttagcggttgcaagaaaagatct |
9064580 |
T |
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| Q |
216 |
ttcaaggataggtggacattttcgatcttaattcttgcatatccaagattacaaaatctgtcaaaaagataacttagtttacttttaccatcaagaattc |
315 |
Q |
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| T |
9064581 |
ttcaaggataggtggacattttcgatctt----cttgcatatccaagattacaaaatctgtcaaaaagataacttagtttacttttaccatcaagaattc |
9064676 |
T |
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| Q |
316 |
tactatgccataaggaaatttgattgtaccatctgccaaggtgagatttatgtttgatggtttcatcttcacctttt |
392 |
Q |
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| T |
9064677 |
tactatgccataaggaaatttgattgtaccatctgccaaggtgagatttatgtttggtggtttcatcttcacctttt |
9064753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 8712281 - 8712348
Alignment:
| Q |
47 |
tttgatgcttatacctagatcacacatacctcttttgatggataacttccaaatggatcagttaaaac |
114 |
Q |
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| T |
8712281 |
tttgatgcttgtacctagatcacacatacctcttttgatggataacttccaaatggatcagttaaaac |
8712348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 9064168 - 9064235
Alignment:
| Q |
47 |
tttgatgcttatacctagatcacacatacctcttttgatggataacttccaaatggatcagttaaaac |
114 |
Q |
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| T |
9064168 |
tttgatgcttgtacctagatcacacatacctcttttgatggataacttccaaatggatcagttaaaac |
9064235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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