View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_11 (Length: 464)
Name: NF1852_low_11
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 26 - 458
Target Start/End: Original strand, 11178564 - 11178996
Alignment:
| Q |
26 |
aacaagaagaaaagaagtattattgtaaaaattgattgagtttggtatagtgaaataagagtattgaaaaataactttaccaaactgaaagaatcttgtt |
125 |
Q |
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| T |
11178564 |
aacaagaagaaaagaagtgttattgtaaaaattgattgagtttggtatagtgaaacaagagtattgaaaaataactttaccaaactgaaagaatcttgtt |
11178663 |
T |
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| Q |
126 |
cttggttcttcaagtctgtctcctcttaacgtctcttccgtatctcaacttcattttgagaagtggtttatatagagagttttaaaccacaatagaagtg |
225 |
Q |
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| T |
11178664 |
cttggttcttcaagtctgtctcctcttaacgtctcttccgtatctcaacttcattttgagaagtggtttatatagagagtttgaaaccacaatagaagtg |
11178763 |
T |
|
| Q |
226 |
ccaacgatgtgtttggttgtatcagcaattattgtcgttatttgcatgctcgcatgaaaatgctccaactagcatcattcttgattgctagtaaaagttt |
325 |
Q |
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| T |
11178764 |
ccaacgatgtgtttggttgtatcagcaattattgtcgttatttgcatgctcgcatgaaaatgctccaactagcatcattcttgattgctagtaaaagttt |
11178863 |
T |
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| Q |
326 |
acaaataacaacaacaaaaaagttcttaataccggcttaacttatggaatcattttccaaactcttaagaaacttaagggtgagtcacatggaaatgcta |
425 |
Q |
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| T |
11178864 |
acaaataacaacaacaaaaaagttcttaataccggcttaacttatggaatcattttccaaactcttaagaaacttaagggtgagtcacatggaaatgcta |
11178963 |
T |
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| Q |
426 |
ctagagcacgagaacaaggagaagaaagaaaag |
458 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
11178964 |
ctagtgcacgagaacaaggagaagaaagaaaag |
11178996 |
T |
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