View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_12 (Length: 462)
Name: NF1852_low_12
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 33187736 - 33187351
Alignment:
| Q |
18 |
aaagatttggcaaactttcaaggtccacacgttatagaaaattggacagcatgtagcatcagttatttgtcaacatttattttaatggggttaattaaaa |
117 |
Q |
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| T |
33187736 |
aaagatttggcaaactttcaaggtccacacgttatagaaaattggacagcatgtagcataagttatttgtcaacatttattttaatggggttaattaaaa |
33187637 |
T |
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| Q |
118 |
atatttgtaannnnnnnatttaaataaaaatctttgacaactttagaattgaattaaattgaaataaacatataattgaagtaagcctgccccgttgaag |
217 |
Q |
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| T |
33187636 |
atatttgtaatttttttatttaaataaaaatctttgtcaactttagaattgaattaaattgaaataaacatataattgaagtaagcctgccccgttgaag |
33187537 |
T |
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| Q |
218 |
tacacttttctgaaaagattagagtaagactggacgcagattccactgtccatagtagtgtaattggaatataccattgctgcagtataaactttgagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33187536 |
tacacttttctgaaaagattagagtaagactggacgcagattccactgtccatagtagtgtaattggattataccattgctgcagtataaactttgagaa |
33187437 |
T |
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| Q |
318 |
gatcaagatcaattttagagaagaaaacaatagtggtgaggccatattgaaaatttggtttaatttgcagtagaatttttctaact |
403 |
Q |
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| T |
33187436 |
gatcaagatcaattttagagaagaaaacaatagtggtgaggccatattgaaaatttggtttaatttgcagtagaatttttctaact |
33187351 |
T |
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