View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1852_low_15 (Length: 410)

Name: NF1852_low_15
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1852_low_15
NF1852_low_15
[»] chr8 (5 HSPs)
chr8 (12-137)||(14697864-14697990)
chr8 (301-387)||(14698160-14698246)
chr8 (301-388)||(24528866-24528953)
chr8 (342-384)||(24375842-24375884)
chr8 (301-384)||(9235414-9235498)
[»] chr6 (2 HSPs)
chr6 (302-382)||(9044528-9044608)
chr6 (302-384)||(25166981-25167064)
[»] chr3 (8 HSPs)
chr3 (301-384)||(25124921-25125004)
chr3 (301-383)||(17030656-17030738)
chr3 (303-383)||(43426334-43426415)
chr3 (299-352)||(45007988-45008041)
chr3 (339-383)||(7272694-7272738)
chr3 (322-381)||(55257796-55257856)
chr3 (342-395)||(30226238-30226291)
chr3 (301-349)||(25158916-25158964)
[»] chr4 (3 HSPs)
chr4 (301-383)||(8810006-8810088)
chr4 (301-384)||(42161343-42161427)
chr4 (324-384)||(13555754-13555814)
[»] chr1 (4 HSPs)
chr1 (305-380)||(22315288-22315362)
chr1 (301-384)||(25059954-25060037)
chr1 (339-381)||(14909957-14909999)
chr1 (352-388)||(31883639-31883675)
[»] chr5 (4 HSPs)
chr5 (299-395)||(21144101-21144197)
chr5 (305-395)||(37869442-37869532)
chr5 (301-350)||(42778932-42778981)
chr5 (339-393)||(34309497-34309551)
[»] chr2 (4 HSPs)
chr2 (301-376)||(41906118-41906193)
chr2 (339-381)||(26498709-26498751)
chr2 (339-388)||(35791130-35791179)
chr2 (339-383)||(31377684-31377728)
[»] scaffold0004 (1 HSPs)
scaffold0004 (301-383)||(82275-82357)
[»] chr7 (5 HSPs)
chr7 (299-376)||(43393833-43393911)
chr7 (301-358)||(1853229-1853285)
chr7 (324-384)||(9689377-9689437)
chr7 (339-383)||(27082684-27082728)
chr7 (339-383)||(27195573-27195617)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 14697864 - 14697990
Alignment:
Q  12 atgaatttgactctgtgatattaatcagtgtatactgtataccatgaccatatgttgatggtctgacggattcagaggtctatagtat-ctataaatatt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14697864 atgaatttgactctgtgatattaatcagtgtatactgtataccatgaccatatgttgatggtctgacggattcagaggtctatagtatactataaatatt 14697963  T
Q  111 ttgactaaaataaaaagcacatcgtta 137  Q
    ||||||||||||||||| ||| |||||    
T  14697964 ttgactaaaataaaaagaacaccgtta 14697990  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 301 - 387
Target Start/End: Original strand, 14698160 - 14698246
Alignment:
Q  301 gtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattacaaagg 387  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14698160 gtacaaaatcaatgatatggcaaggggtaacctgaaatatcgatgatatggcagggggcaaactgaaattttctcaaattacaaagg 14698246  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 388
Target Start/End: Original strand, 24528866 - 24528953
Alignment:
Q  301 gtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattacaaaggg 388  Q
    |||||||||| ||||||| | | ||||||| |||||||||||||||||||| |||||| ||||  | ||| ||| |||||||||||||    
T  24528866 gtacaaaatcgatgatattacagggggtaaactgaaatatcgatgatatggtagggggtaaaccgagattctctaaaattacaaaggg 24528953  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 24375884 - 24375842
Alignment:
Q  342 gatgatatggcagggggcaaactaaaattttctcaaattacaa 384  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||    
T  24375884 gatgatatggcagggggtaaactgaaatttgctcaaattacaa 24375842  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 9235414 - 9235498
Alignment:
Q  301 gtacaaaatcaatgatatgaaaagg-ggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattacaa 384  Q
    |||||||||| ||||||||| | || ||||| | ||||||||||||||||| || |||  |||| |||||| | |||||||||||    
T  9235414 gtacaaaatcgatgatatgacagggtggtaaaccgaaatatcgatgatatgtcaagggttaaaccaaaattctttcaaattacaa 9235498  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 382
Target Start/End: Original strand, 9044528 - 9044608
Alignment:
Q  302 tacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattac 382  Q
    ||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||| |||| |||||| |||||||||||    
T  9044528 tacaaaatcgatgatatggcaaggggtaaactgaaatatcgatgatatggcagggggtaaaccaaaattctctcaaattac 9044608  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 384
Target Start/End: Original strand, 25166981 - 25167064
Alignment:
Q  302 tacaaaatcaatgatatgaaaagggg-taacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattacaa 384  Q
    ||||||||| ||||||||| |||||| ||| |||||||||||||  |||||| || || ||||  ||||| |||||||||||||    
T  25166981 tacaaaatcgatgatatgacaagggggtaaactgaaatatcgatcctatggcgggaggtaaaccgaaattctctcaaattacaa 25167064  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 384
Target Start/End: Complemental strand, 25125004 - 25124921
Alignment:
Q  301 gtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattacaa 384  Q
    |||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||| ||||| ||||| || ||||||||||    
T  25125004 gtacaaaatcgatgatatggaagggggtaaactgaaatatcgatgatatggcagggggtaaactgaaattctcccaaattacaa 25124921  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 17030656 - 17030738
Alignment:
Q  301 gtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattaca 383  Q
    |||||||||||||||||||  | | |||||||||||||||||||||||||||||| || |||| |||||| |||||| |||||    
T  17030656 gtacaaaatcaatgatatgtcaggtggtaacctgaaatatcgatgatatggcaggaggtaaaccaaaattctctcaatttaca 17030738  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 43426334 - 43426415
Alignment:
Q  303 acaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggca-gggggcaaactaaaattttctcaaattaca 383  Q
    |||||||| ||||| ||  |||| |||| |||||||||||||||||||||| ||||| ||||  ||||| ||||||||||||    
T  43426334 acaaaatcgatgatgtggcaaggagtaaactgaaatatcgatgatatggcaggggggtaaaccgaaattctctcaaattaca 43426415  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 45007988 - 45008041
Alignment:
Q  299 ccgtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggc 352  Q
    |||||||||||||| ||| ||  | |||||||||||||||||||||||||||||    
T  45007988 ccgtacaaaatcaacgatttggcagggggtaacctgaaatatcgatgatatggc 45008041  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 7272694 - 7272738
Alignment:
Q  339 atcgatgatatggcagggggcaaactaaaattttctcaaattaca 383  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||    
T  7272694 atcgatgatatggcagggggtaaactgaaatttcctcaaattaca 7272738  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 381
Target Start/End: Complemental strand, 55257856 - 55257796
Alignment:
Q  322 aaggggtaacctgaaatatcgatgatatggcagggg-gcaaactaaaattttctcaaatta 381  Q
    ||||||||| |||||||||||||||||||||||||| | ||||| ||||| | ||||||||    
T  55257856 aaggggtaaactgaaatatcgatgatatggcaggggtgtaaactgaaattctatcaaatta 55257796  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 30226238 - 30226291
Alignment:
Q  342 gatgatatggcagggggcaaactaaaattttctcaaattacaaagggtaaaagt 395  Q
    ||||||||| ||||||| |||||||||||| |||||| ||||| |||| |||||    
T  30226238 gatgatatgacagggggtaaactaaaatttgctcaaactacaaggggtgaaagt 30226291  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 25158916 - 25158964
Alignment:
Q  301 gtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatat 349  Q
    |||||||||| ||||||||  ||||||||| || |||||||||||||||    
T  25158916 gtacaaaatcgatgatatggcaaggggtaaactaaaatatcgatgatat 25158964  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 8810006 - 8810088
Alignment:
Q  301 gtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattaca 383  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||  |||||| ||||  ||||||||||||||||||    
T  8810006 gtacaaaatcaatgatatgacagggggtaacctgaaatatcgatgacatgatagggggtaaaccgaaattttctcaaattaca 8810088  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 42161343 - 42161427
Alignment:
Q  301 gtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagg-gggcaaactaaaattttctcaaattacaa 384  Q
    |||||||||  ||||||||| |  |||||| |||||||||||||||||||||||| ||| |||   ||||| |||||||||||||    
T  42161343 gtacaaaattgatgatatgacagagggtaaactgaaatatcgatgatatggcaggagggtaaatcgaaattctctcaaattacaa 42161427  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 13555814 - 13555754
Alignment:
Q  324 ggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattacaa 384  Q
    ||||||| | ||||||| |||||||||| |||||| ||||  ||||| |||||||||||||    
T  13555814 ggggtaaaccgaaatattgatgatatggtagggggtaaaccgaaattctctcaaattacaa 13555754  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 22315362 - 22315288
Alignment:
Q  305 aaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaatt 380  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  22315362 aaaatcaatgatatgaca-ggggtaccctgaaatatcgatgatatggaagggggtaaactgaaattttctcaaatt 22315288  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 384
Target Start/End: Complemental strand, 25060037 - 25059954
Alignment:
Q  301 gtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattacaa 384  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||| ||||||| ||||  ||||  |||||||||||||    
T  25060037 gtacaaaatcaatgatatggcagggggtaacctgaaatatcgatgatatgacagggggtaaaccgaaatgctctcaaattacaa 25059954  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 14909999 - 14909957
Alignment:
Q  339 atcgatgatatggcagggggcaaactaaaattttctcaaatta 381  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  14909999 atcgatgatatggcagggggtaaactgaaattttctcaaatta 14909957  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 31883639 - 31883675
Alignment:
Q  352 cagggggcaaactaaaattttctcaaattacaaaggg 388  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  31883639 cagggggtaaaccaaaattttctcaaattacaaaggg 31883675  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 395
Target Start/End: Complemental strand, 21144197 - 21144101
Alignment:
Q  299 ccgtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattacaaagggtaaaagt 395  Q
    ||||||||| |  ||||||||  ||||||||| || |||||||||||||||| ||| ||| |||| |||||| ||||||||||||| ||| ||||||    
T  21144197 ccgtacaaagtagatgatatggcaaggggtaaactaaaatatcgatgatatgacagagggtaaaccaaaattctctcaaattacaaggggcaaaagt 21144101  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 395
Target Start/End: Original strand, 37869442 - 37869532
Alignment:
Q  305 aaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattacaaagggtaaaagt 395  Q
    |||||||||||||||  | ||||||| |||||||||||||||||||||||| || |||   ||||| |||||||||| || ||| ||||||    
T  37869442 aaaatcaatgatatgggagggggtaaactgaaatatcgatgatatggcaggaggtaaatagaaattctctcaaattataaggggcaaaagt 37869532  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 42778932 - 42778981
Alignment:
Q  301 gtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatg 350  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||||    
T  42778932 gtacaaaatcaatgatatggcagggggtaacctgaaatatcgatgatatg 42778981  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 34309551 - 34309497
Alignment:
Q  339 atcgatgatatggcagggggcaaactaaaattttctcaaattacaaagggtaaaa 393  Q
    |||||||||||| ||||||| |||  ||||||||||||||||||| |||| ||||    
T  34309551 atcgatgatatgacagggggtaaatcaaaattttctcaaattacagagggcaaaa 34309497  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 41906118 - 41906193
Alignment:
Q  301 gtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctca 376  Q
    |||||||||| | |||||| || ||||||| |||||||||| |||||||||||||||| ||||| ||||| |||||    
T  41906118 gtacaaaatcgacgatatggaagggggtaaactgaaatatcaatgatatggcagggggtaaactgaaattctctca 41906193  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 26498751 - 26498709
Alignment:
Q  339 atcgatgatatggcagggggcaaactaaaattttctcaaatta 381  Q
    |||||||||||||||||||| ||||  ||||||||||||||||    
T  26498751 atcgatgatatggcagggggtaaaccgaaattttctcaaatta 26498709  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 35791130 - 35791179
Alignment:
Q  339 atcgatgatatggcagggggcaaactaaaattttctcaaattacaaaggg 388  Q
    |||||||||||||||||||| ||||  ||||  |||||||||||||||||    
T  35791130 atcgatgatatggcagggggtaaaccgaaatactctcaaattacaaaggg 35791179  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 31377684 - 31377728
Alignment:
Q  339 atcgatgatatggcagggggcaaactaaaattttctcaaattaca 383  Q
    |||||||||||||||||||  |||| ||||||| |||||||||||    
T  31377684 atcgatgatatggcaggggttaaaccaaaatttgctcaaattaca 31377728  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 82275 - 82357
Alignment:
Q  301 gtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattaca 383  Q
    |||||||||  || |||||| ||| ||||| |  ||||||||||||||| |||||||| ||||  ||||| ||||||||||||    
T  82275 gtacaaaattgataatatgacaagaggtaaaccaaaatatcgatgatatagcagggggtaaaccgaaattctctcaaattaca 82357  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 43393833 - 43393911
Alignment:
Q  299 ccgtacaaaatcaatgatatgaaaagggg-taacctgaaatatcgatgatatggcagggggcaaactaaaattttctca 376  Q
    |||||||||||| | |||||| || |||| ||| |||||||||||||| ||| |||||||| ||||| ||||| |||||    
T  43393833 ccgtacaaaatcgacgatatggaagggggataaactgaaatatcgatggtatagcagggggtaaactgaaattctctca 43393911  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 1853229 - 1853285
Alignment:
Q  301 gtacaaaatcaatgatatgaaaaggggtaacctgaaatatcgatgatatggcaggggg 358  Q
    |||||||||| ||||||||| | ||||||| | ||||||||||||||| |||||||||    
T  1853229 gtacaaaatcgatgatatgacagggggtaaac-gaaatatcgatgataaggcaggggg 1853285  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 9689437 - 9689377
Alignment:
Q  324 ggggtaacctgaaatatcgatgatatggcagggggcaaactaaaattttctcaaattacaa 384  Q
    ||||||| | ||||||| |||||||||| |||||| ||||  ||||| |||||||||||||    
T  9689437 ggggtaaaccgaaatattgatgatatggtagggggtaaaccgaaattctctcaaattacaa 9689377  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 383
Target Start/End: Complemental strand, 27082728 - 27082684
Alignment:
Q  339 atcgatgatatggcagggggcaaactaaaattttctcaaattaca 383  Q
    |||||| ||||||||||||| |||| |||||| ||||||||||||    
T  27082728 atcgataatatggcagggggtaaaccaaaattatctcaaattaca 27082684  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 27195573 - 27195617
Alignment:
Q  339 atcgatgatatggcagggggcaaactaaaattttctcaaattaca 383  Q
    |||||| ||||||||||||| |||| |||||| ||||||||||||    
T  27195573 atcgataatatggcagggggtaaaccaaaattatctcaaattaca 27195617  T

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