View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1852_low_16 (Length: 397)

Name: NF1852_low_16
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1852_low_16
NF1852_low_16
[»] chr7 (1 HSPs)
chr7 (3-193)||(32920257-32920456)
[»] chr4 (2 HSPs)
chr4 (172-213)||(11819024-11819065)
chr4 (7-55)||(51421867-51421915)
[»] chr2 (1 HSPs)
chr2 (78-123)||(42549848-42549893)
[»] chr3 (1 HSPs)
chr3 (78-122)||(38850347-38850391)
[»] chr1 (1 HSPs)
chr1 (81-117)||(8672147-8672183)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 32920257 - 32920456
Alignment:
Q  3 gataatttaaaaaagctatgagagaaactattagagaagatttagaggttaattctaatatggttttgaatagaa---------gtaatttgattcatat 93  Q
    ||||||||| |||| |||||||||||||||||| | |||||||||||||||||   |||||||||| | ||||||         ||||||||||||||||    
T  32920257 gataatttagaaaaactatgagagaaactattaaaaaagatttagaggttaatcaaaatatggtttaggatagaatattatgatgtaatttgattcatat 32920356  T
Q  94 agccaaccctacttagtaggataaaacttgtctgttcttgtaaacaattttaatttggacgttcatttgannnnnnnnattgaagtggacataaaatgat 193  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  32920357 agccaaccctatttagtaggatacaacttgtctgttcttgtaaacaattttaatttggacgttcatttgattttttttattgaagtggacataaaatgat 32920456  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 11819024 - 11819065
Alignment:
Q  172 attgaagtggacataaaatgatgtgtcactaggcatattgtt 213  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  11819024 attgaaatggacataaaatgatgtgtcactaggcacattgtt 11819065  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 51421867 - 51421915
Alignment:
Q  7 atttaaaaaagctatgagagaaactattagagaagatttagaggttaat 55  Q
    ||||| |||| |||| ||||||||||||||  |||||||||||||||||    
T  51421867 atttagaaaaactataagagaaactattaggaaagatttagaggttaat 51421915  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 42549893 - 42549848
Alignment:
Q  78 gtaatttgattcatatagccaaccctacttagtaggataaaacttg 123  Q
    |||||||||||||| |||||||||| ||||||| ||||||| ||||    
T  42549893 gtaatttgattcatgtagccaaccccacttagtgggataaagcttg 42549848  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 38850347 - 38850391
Alignment:
Q  78 gtaatttgattcatatagccaaccctacttagtaggataaaactt 122  Q
    |||||||||| ||| ||||| |||| |||||||||||||||||||    
T  38850347 gtaatttgatccatgtagccgaccccacttagtaggataaaactt 38850391  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 8672147 - 8672183
Alignment:
Q  81 atttgattcatatagccaaccctacttagtaggataa 117  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  8672147 atttgatccatatagccaaccccacttagtaggataa 8672183  T

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