View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_17 (Length: 395)
Name: NF1852_low_17
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 381
Target Start/End: Original strand, 29464160 - 29464526
Alignment:
| Q |
16 |
aaattaaacaactcatattttcatttcgatttcgtcaagttaaaattaggttattcgatctccatccaacgcgttggatcaaagcaaactactatcaaga |
115 |
Q |
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| T |
29464160 |
aaattaaacaactcatattttcatttcgatttcgtcaagttaaaattaggttatttgatctccatccaacacgttggatcaaagcaaactgctatcaaga |
29464259 |
T |
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| Q |
116 |
aacaaatgtttaaccgacatcgaaacaaaccattgcgaatatgaagcctggggattggcttcatattctcagttgtcaatctgataggatttccgccagg |
215 |
Q |
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| T |
29464260 |
aacaaatgtttaaccgacgtcgaaacaaatcattgcgaatatgaagcctggggactggcttcatattctcagttgtcaatctgataggatttccgccagg |
29464359 |
T |
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| Q |
216 |
ttttttatgccatcgcgctcccttgcgacacaagtcagtctacatttcagcccactcacttctgttggcatttttatggccatccttcttctctagacac |
315 |
Q |
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| T |
29464360 |
tttttgatgccatcgcgctcccttgcgacacaagtcagtctacatttcagcccactcacttctgtgggcatttttatggccatccttcttctctagacac |
29464459 |
T |
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| Q |
316 |
cacattc-aattggtgctctcagaccaagcattgtgttgatcctctctcatggctgtaatcaatctt |
381 |
Q |
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| T |
29464460 |
cacattcaaattggtgctctcagaccaagcattgtgttgatcctctctcatgactgtaatcaatctt |
29464526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 14996470 - 14996537
Alignment:
| Q |
18 |
attaaacaactcatattttcatttcgatttcgtcaagttaaaa-ttaggttattcgatctccatccaa |
84 |
Q |
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| T |
14996470 |
attaaacaactcgtattttaatttcgatttgatgaagttaaaatttaggttattcgattttcatccaa |
14996537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 14996762 - 14996823
Alignment:
| Q |
89 |
ttggatcaaagcaaactactatcaagaaacaaatgtttaaccgacatcgaaacaaaccattg |
150 |
Q |
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| T |
14996762 |
ttggatcaaaataaactgctctcaagaaccaaatatttaaccgacattgaaacaaatcattg |
14996823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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