View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_19 (Length: 378)
Name: NF1852_low_19
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 31396321 - 31395987
Alignment:
| Q |
1 |
gtaaacaaaacaaaaaccaataaagatactaagaacaatgnnnnnnn-tgtaaagaagcgtaagaaaatagacaaggaagatatggactaattaatttta |
99 |
Q |
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| T |
31396321 |
gtaaacaaaacaaaaaccaataaagatactaagaacaatgaaaagaaatgtaaagaagcgtaagaaaatagacaaggaagaaatggactaattaatttta |
31396222 |
T |
|
| Q |
100 |
aatgcacacacatagaaaacttaatgacggggtaagaattaaaacacaatctagacgcaaggaattaaggagaaaatgtagaaattaataaaataagaga |
199 |
Q |
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| T |
31396221 |
aatgcacacacatagaaaacttaatgacggggtaagaattaaaacacaatctagacgcaaggaattaaggaaaaaatgtagaaattaataaaataagaga |
31396122 |
T |
|
| Q |
200 |
aataacataatgtaagatacaatcacataagnnnnnnnnttgattagggtaaacaccaaggataaacag--acaaacataaacgagaaaatatgaaatga |
297 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
31396121 |
aataacataatgtaagatacaatcgcataagaaaaaaaattgattagggtaaacaccaaggataaacagacacaaacataaacgagacaatatgaaatga |
31396022 |
T |
|
| Q |
298 |
ttgttctatatatttcgtttgtaagtacgatataa |
332 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31396021 |
ttgttctatatatttcgtttgtaagtacgatataa |
31395987 |
T |
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