View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1852_low_2 (Length: 750)

Name: NF1852_low_2
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1852_low_2
NF1852_low_2
[»] scaffold0280 (2 HSPs)
scaffold0280 (16-533)||(9411-9927)
scaffold0280 (631-736)||(9194-9299)
[»] chr1 (2 HSPs)
chr1 (96-521)||(21910236-21910658)
chr1 (644-729)||(21909601-21909686)


Alignment Details
Target: scaffold0280 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 533
Target Start/End: Complemental strand, 9927 - 9411
Alignment:
Q  16 atgaacaacagtaatgaaagtagcagataaattttctaaaaacatgcatgaatttcacgaggaatcgaaaatgcacaatccttattcgatattcaataat 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||     
T  9927 atgaacaacagtaatgaaagttgcagataaattttctaaaaacatgcatgaatttcacgaggaatcgaaaatggacaatccttattcaatattcaataac 9828  T
Q  116 ccaaatttctgaaccctaacacaattatcacaacatatctatcataaaactataattcagtaaatttttcaaattggggccaagaatgatagaattacaa 215  Q
    || ||||||| |||||||| |||||||||||| |||  |||||  ||| | |||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  9827 cccaatttctaaaccctaaaacaattatcacagcattcctatcccaaatccataactcagtgaatttt-caaattggggccaagaatgatagaattacaa 9729  T
Q  216 tgtacctgctgagccgcaacgctacgattaggaaaatcataagtaggattagcataagtattatcaagataaacaacatcaacatcaccatcatgttcct 315  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9728 tgtacctgctgagccgcaacgctacgagtaggaaaatcataagtaggattagcataagtattatcaagataaacaacatcaacatcaccatcatgttcct 9629  T
Q  316 caagagcaacaccaagcatattttttgcaatccttgccttctcacaaccagcttcccaacgaaaatcaccagtataaagcacacaaccaaaatctccgcg 415  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9628 taagagcaacaccaagcatatttttggcaatccttgccttctcacaaccagcttcccaacgaaaatcaccagtataaagcacacaaccaaaatctccgcg 9529  T
Q  416 aaaaagcaacataatcgaacctattccaaacactcacaacaaataacaaattaaacgacataactcaaatcacagctgtaaaatagtcatcattaatact 515  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| || ||||    
T  9528 gaaaagcaacataatcgaacctattccaaacactcacaacaaataacaaattaaacgacataactcaaatcacattagtaaaatagtcatcagtagtact 9429  T
Q  516 actttagttaataataat 533  Q
     ||||| |||||||||||    
T  9428 cctttaattaataataat 9411  T

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Target: scaffold0280; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 631 - 736
Target Start/End: Complemental strand, 9299 - 9194
Alignment:
Q  631 gggttagggttacgtaccgggacagtgacaggcgtcgatggcggtgacaatgacggtggtgggatcggaagaagaaggcgaacggagtgagagagtgtga 730  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9299 gggttagggatacgtaccgggacagtgacaggcgtcgatagcggtgacaacaacggtggtgggatcggaagaagaaggcgaacggagtgagagagtgtga 9200  T
Q  731 gaagtg 736  Q
    ||||||    
T  9199 gaagtg 9194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 96 - 521
Target Start/End: Complemental strand, 21910658 - 21910236
Alignment:
Q  96 cttattcgatattcaataatccaaatttctgaaccctaacacaattatcacaacatatctatcataaaactataattcagtaaatttttcaaattggggc 195  Q
    ||||||||||||||| |||||| | |||| |||||||||||||||||||||| ||| ||||||  |||   |||| ||| | ||| ||||||||| ||||    
T  21910658 cttattcgatattcattaatcccattttccgaaccctaacacaattatcacagcatttctatcccaaattcataactcaatgaatgtttcaaattagggc 21910559  T
Q  196 caagaatgatagaattacaatgtacctgctgagccgcaacgctacgattaggaaaatcataagtaggattagcataagtattatcaagataaacaacatc 295  Q
     || |||||||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  21910558 -aacaatgatagaattgcaatgtacctgttgagccgcaacgctacgactaggaaattcataagtaggattagcataagtattatcaaggcaaacaacatc 21910460  T
Q  296 aacatcaccatcatgttcctcaagagcaacaccaagcatattttttgcaatccttgccttctcacaaccagcttcccaacgaaaatcaccagtataaagc 395  Q
    |||| |||||||||||||||  ||||||||||||||||| | | | |||||||||||||||||||||| | ||||||||||||||||||| |||| ||||    
T  21910459 aacaacaccatcatgttcctttagagcaacaccaagcatttctctagcaatccttgccttctcacaactaccttcccaacgaaaatcaccggtatgaagc 21910360  T
Q  396 acacaaccaaaatctccgcgaaaaagcaacataatcgaacctattccaaacactcacaacaaataacaaattaaacgacataactcaaatcacagctgta 495  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||| |||  ||||||||||||||| |||||||| |||| |||||| ||  |||    
T  21910359 tcacaaccaaaatctccacgaaaaagcaacataatcgaacctattccaaaaact--caacaaataacaaatcaaacgacagaactgaaatcaaagtagta 21910262  T
Q  496 aaatagtcatcattaatactacttta 521  Q
    |||||||| ||| || ||||||||||    
T  21910261 aaatagtcgtcagtagtactacttta 21910236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 644 - 729
Target Start/End: Complemental strand, 21909686 - 21909601
Alignment:
Q  644 gtaccgggacagtgacaggcgtcgatggcggtgacaatgacggtggtgggatcggaagaagaaggcgaacggagtgagagagtgtg 729  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  21909686 gtaccgggacagtgacaggcatcgatggcggtgacaatgacggtggtgggattggaagaagaaggtgaacggagtgagatagtgtg 21909601  T

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