View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_20 (Length: 358)
Name: NF1852_low_20
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 40734450 - 40734118
Alignment:
| Q |
17 |
ggaaggtcatgacaaaagtatgattgcattgttggaataactatgaccaaaaagaaattaaagtgatgccaagtcaattcatgcaaaagactatcgccat |
116 |
Q |
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| T |
40734450 |
ggaaggtcatgacaaaagtatgattgcattgttggaataactatggccaaaaagaaattaaagtgatgccaagtcaattcatgcaaaagactatcgccat |
40734351 |
T |
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| Q |
117 |
tacattttacaacatctgctttttaaagatgatgccaatatcaaaggtgaggaatggtggtgttggaattcaagtgtgaccgattagtcttacgttagtc |
216 |
Q |
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| T |
40734350 |
tacattttacaacatctgctttttaaagatgatgccaatatcaaaggtgagggatggtggtgttggaattcaagtgtgaccgattagtcttacgtgagtt |
40734251 |
T |
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| Q |
217 |
caaaggatcaagctaaatgaatgatatataaaaaacaaacacatataatctatgtcataatattttgtatgaagatgtggtatcggagnnnnnnnnacgc |
316 |
Q |
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| T |
40734250 |
caaaggatcaagctaaatgaatgatatataaaaaacaaacacatataatctatgtcataatattttgtatgaagatgtggtatcagag-tttttttacgc |
40734152 |
T |
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| Q |
317 |
atcattaattgtttgtaatgattccagtattatc |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40734151 |
atcattaattgtttgtaatgattccagtattatc |
40734118 |
T |
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