View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_24 (Length: 342)
Name: NF1852_low_24
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 36007648 - 36007340
Alignment:
| Q |
18 |
attattgcacctatgcaaatcaaattttgaaaaatatcatctttggacccaaatgagccttaagttgagtattgttaattcatcaatgtcgctttctttc |
117 |
Q |
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| T |
36007648 |
attattgcacctatgcaaatcaaattttgacaaatatcatctttggacccaaatgagccttaagttgagtatt---aattcatcaatgtcgctttctttc |
36007552 |
T |
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| Q |
118 |
taacacagttaaatgagcgcataatccaattccaaaatcctggctctgcttctagttttagcatatataaattttgggtcaattaattgtttgatattca |
217 |
Q |
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| T |
36007551 |
taacacagttaaatgagcgcataatccaattccaaaatcctggctctgcttctagttttagcatatataaattttgggtcaattaattgtttgattttca |
36007452 |
T |
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| Q |
218 |
ttgataatagtaacataatgaaccttgtctgtacaaaccaaagcgaatatgctgtagtattttctttcatagagcagtatatatagcacatcacaagcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36007451 |
ttgataatagtaacataatgaaccttgtctgtacaaaccaaagcgaatatgctgtagtattttctttcatagagcagtatatatagcacatcacaagcaa |
36007352 |
T |
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| Q |
318 |
aatgttctattc |
329 |
Q |
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|||||||||||| |
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| T |
36007351 |
aatgttctattc |
36007340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 319
Target Start/End: Complemental strand, 36013355 - 36013199
Alignment:
| Q |
163 |
ctgcttctagttttagcatatataaattttgggtcaattaattgtttgatattcattgataatagtaacataatgaaccttgt-ctgtacaaaccaaagc |
261 |
Q |
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||||||||||||| |||||| | || |||| |||||||| ||||||||||||||||| | | | |||||||| ||| ||| ||||||| ||||||| |
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| T |
36013355 |
ctgcttctagtttcagcataaacaacttttaggtcaatttgttgtttgatattcattgttgacaataacataacaaactttgcactgtacag-ccaaagc |
36013257 |
T |
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| Q |
262 |
gaatatgctgtagtattttctttcatagagcagtatatatagcacatcacaagcaaaa |
319 |
Q |
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||||| |||||||||| |||||||||| | ||||||||||| ||| ||||||||||| |
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| T |
36013256 |
gaataagctgtagtatcttctttcatataacagtatatatacaacaacacaagcaaaa |
36013199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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