View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_26 (Length: 341)
Name: NF1852_low_26
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_26 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 206 - 341
Target Start/End: Original strand, 37805953 - 37806088
Alignment:
| Q |
206 |
acgccgcattgtatatacaagtaaatagtataccacaaacactaatcatgtccatggatcaatttttactccagcacaacctcaaatcaaatttatttaa |
305 |
Q |
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| T |
37805953 |
acgcctcattttatatacaagtaaatagtatgccacaaacactaatcaagtccatggagcaatttttactctagcacaatctcaaatcaaatttatttaa |
37806052 |
T |
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| Q |
306 |
atacacacacaaatatatttaaaagaagaataattt |
341 |
Q |
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| T |
37806053 |
atacacacacaaatatatttaaaagaagaataattt |
37806088 |
T |
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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 37805768 - 37805848
Alignment:
| Q |
20 |
ttaatttttaaaacgaggtctagatagagtggtgcaatctatataagatttcatccgataaaaatatgatgttaaagtgag |
100 |
Q |
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| T |
37805768 |
ttaatttttaaaacgaggtctagatagagtggtgcaatctatataagatttcatccaataaaaatataatgttaaagtgag |
37805848 |
T |
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