View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1852_low_3 (Length: 604)
Name: NF1852_low_3
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 46709467 - 46708873
Alignment:
| Q |
1 |
tcaacgattaccctttcgtggtggatgagctagagatttggtttgcaatcaacacatgggttcaggactactgttccttttactacaagaatgatgacat |
100 |
Q |
| |
|
||||||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46709467 |
tcaacgattacccttacgcggtggacgggctagagatttggtttgcaatcaacacatgggttcaggactactgttccttttactacaagaatgatgacac |
46709368 |
T |
|
| Q |
101 |
ggtaaagaaagatgcagaactacaatcttggtggaaggaattgatacaagaaggtcacggcgacaagaaaaacgagccttggtggccaaagatgcaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46709367 |
ggtaaagaaagatgcagaactacaatcttggtggaaggaattgatacaagaaggtcacggcgacaagaaaaacgagccttggtggccaaagatgcaaaca |
46709268 |
T |
|
| Q |
201 |
gtggaagagttgacggaaacatgcacaatcattatatggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggttactcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46709267 |
gtggaagagttgacggaaacatgcacaatcattatatggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggttactcac |
46709168 |
T |
|
| Q |
301 |
caaaccgtccaacaataagtcgccgattcatgcctgagaaaggaactatagattatgatgaacttgtgacaaatcctgataaagcttttttgaaaacaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46709167 |
caaaccgtccaacaataagtcgccgattcatgcctgagaaaggaactatagagtatgatgaacttgtgacaaatcctgataaagcttttttgaaaacaat |
46709068 |
T |
|
| Q |
401 |
cacgggacaattgcagactcttgttggaatttcgcttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagtatgcat |
500 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46709067 |
cacggcacaattgcagactcttgttggcatttcgcttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagtatgcat |
46708968 |
T |
|
| Q |
501 |
tggacatgtgatgcagaaccactggaagcatttgacaggtttggaaagaaactgaaagaaattgaagaaagaattgtagctatgaatgatgatgt |
595 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46708967 |
tggacatgtgatgcagagccactggaagcatttgacaggtttggaaagaaactgaaagaaattgaagaaagaattgtagctatgaatgatgatgt |
46708873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 233 - 562
Target Start/End: Complemental strand, 46708270 - 46707941
Alignment:
| Q |
233 |
tatatggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggttactcaccaaaccgtccaacaataagtcgccgattcatg |
332 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||| || || ||| ||||| ||||||| | |||||| |
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|
| T |
46708270 |
tatatggattgcttcagccctacatgcagctgtaaaatttggacaatatccttatgcaagttactcgcctaat-gtctaacaaaaagtcgcagtttcatg |
46708172 |
T |
|
| Q |
333 |
cctgagaaaggaactatagattatgatgaacttgtgacaaatcctgataaagcttttt-tgaaaacaatcacgggacaattgcagactcttgttggaatt |
431 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| |||||||||| || ||||||| |||||||| | ||| |||||||||| ||||||||| || |
|
|
| T |
46708171 |
cctgagaaaggaactatagagtattatgaacttgtggcaaatcctgagaaggctttttctgaaaacagttgcggcgcaattgcagattcttgttggcgtt |
46708072 |
T |
|
| Q |
432 |
tcgcttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagtatgcattggacatgtgatgcagaaccactggaagcat |
531 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||| || ||||||||| ||| ||||||||| |
|
|
| T |
46708071 |
tcgcttatagaaatactgtctgcacattcttctgatgaggtctaccttggagaaagagacactaaacattggatatatgatgcagagccattggaagcat |
46707972 |
T |
|
| Q |
532 |
ttgacaggtttggaaagaaactgaaagaaat |
562 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
46707971 |
ttgacaaatttggaaagaaactgaaagaaat |
46707941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 33 - 492
Target Start/End: Original strand, 36926156 - 36926615
Alignment:
| Q |
33 |
gagatttggtttgcaatcaacacatgggttcaggactactgttccttttactacaagaatgatgacatggtaaagaaagatgcagaactacaatcttggt |
132 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| | |||||||| ||| ||||||||||| |||| ||| | |||||||| | ||||| |||||||||| |
|
|
| T |
36926156 |
gagatttggtttgccatcaagacatgggttaaagactactgctccatttactacaaggatgaggactcaatcaagaaagactcggaacttcaatcttggt |
36926255 |
T |
|
| Q |
133 |
ggaaggaattgatacaagaaggtcacggcgacaagaaaaacgagccttggtggccaaagatgcaaacagtggaagagttgacggaaacatgcacaatcat |
232 |
Q |
| |
|
|||||||| | | |||| ||||| || ||||||||| | ||||||||||||||||||||||| || | |||||| ||| ||||| ||||| || || |
|
|
| T |
36926256 |
ggaaggaaataagggaagagggtcatggtgacaagaaagatgagccttggtggccaaagatgcatactctcgaagagctgattgaaacttgcactattat |
36926355 |
T |
|
| Q |
233 |
tatatggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggttactcaccaaaccgtccaacaataagtcgccgattcatg |
332 |
Q |
| |
|
||||||||||||||||||||| ||||| || || ||||||||||| ||||| | || ||| || |||| | ||||| | || || || ||| ||||| |
|
|
| T |
36926356 |
tatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatg |
36926455 |
T |
|
| Q |
333 |
cctgagaaaggaactatagattatgatgaacttgtgacaaatcctgataaagcttttttgaaaacaatcacgggacaattgcagactcttgttggaattt |
432 |
Q |
| |
|
||||| ||||||||| ||| || |||||||| || ||||||||| ||||||||| ||||||||||||| ||| || || || || |||| ||| |
|
|
| T |
36926456 |
cctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtcttt |
36926555 |
T |
|
| Q |
433 |
cgcttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagaca |
492 |
Q |
| |
|
| ||| | ||||| ||||||| ||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
36926556 |
cacttgtggaaatattgtctaggcatgctagtgatgaggtctaccttggacagagagaca |
36926615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 47126934 - 47126843
Alignment:
| Q |
222 |
tgcacaatcattatatggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggttactcaccaaaccgtccaac |
313 |
Q |
| |
|
||||| || ||||||||| | ||||| ||| | ||||||||||| |||||||||||||| |||| |||||||||| |||||| |||||||| |
|
|
| T |
47126934 |
tgcaccattattatatgggtggcttctgcttttcatgcagctgtgaactttggacaatacccttatgcaggttacctaccaaatcgtccaac |
47126843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 343
Target Start/End: Complemental strand, 6262408 - 6262182
Alignment:
| Q |
117 |
gaactacaatcttggtggaaggaattgatacaagaaggtcacggcgacaagaaaaacgagccttggtggccaaagatgcaaacagtggaagagttgacgg |
216 |
Q |
| |
|
||||| |||||||||||||| ||| | || ||| ||||| || ||||||||| ||||||| |||||||| || |||||||| |||||||||| |
|
|
| T |
6262408 |
gaactccaatcttggtggaaagaagttgtagaagtgggtcatggtgacaagaaagacgagccatggtggccgaaaatgcaaactcgcgaagagttgattc |
6262309 |
T |
|
| Q |
217 |
aaacatgcacaatcattatatggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggttactcaccaaaccgtccaacaat |
316 |
Q |
| |
|
|| |||| || || ||||||| |||||||||||| ||||||||||| || |||||||||||||| | || ||||| | | |||||||||||| | |
|
|
| T |
6262308 |
aagtttgcagtattatcatatggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggaggtttcatattaaaccgtccaactct |
6262209 |
T |
|
| Q |
317 |
aagtcgccgattcatgcctgagaaagg |
343 |
Q |
| |
|
||| | ||||| |||||||||||||| |
|
|
| T |
6262208 |
tagtaggcgattaatgcctgagaaagg |
6262182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 6273500 - 6273451
Alignment:
| Q |
234 |
atatggattgcttcagctctacatgcagctgtaaactttggacaatatcc |
283 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || |||||||||||||| |
|
|
| T |
6273500 |
atatggattgcttcagcacttcatgcagctgttaattttggacaatatcc |
6273451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 6389931 - 6389882
Alignment:
| Q |
234 |
atatggattgcttcagctctacatgcagctgtaaactttggacaatatcc |
283 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || |||||||||||||| |
|
|
| T |
6389931 |
atatggattgcttcagcacttcatgcagctgttaattttggacaatatcc |
6389882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 6368949 - 6368901
Alignment:
| Q |
234 |
atatggattgcttcagctctacatgcagctgtaaactttggacaatatc |
282 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || ||||||||||||| |
|
|
| T |
6368949 |
atatggattgcttcagcacttcatgcagctgttaattttggacaatatc |
6368901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 6423208 - 6423160
Alignment:
| Q |
232 |
ttatatggattgcttcagctctacatgcagctgtaaactttggacaata |
280 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| || ||||||||||| |
|
|
| T |
6423208 |
ttatatggattgcttcagcacttcatgcagctgttaattttggacaata |
6423160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 6351291 - 6351240
Alignment:
| Q |
232 |
ttatatggattgcttcagctctacatgcagctgtaaactttggacaatatcc |
283 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| || || ||||||||||| |
|
|
| T |
6351291 |
ttatatggattgcttcagcacttcatgcagctgttaatttcggacaatatcc |
6351240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 6456205 - 6456154
Alignment:
| Q |
234 |
atatggattgcttcagctctacatgcagctgtaaactttggacaatatcctt |
285 |
Q |
| |
|
||||||| |||||||||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
6456205 |
atatggactgcttcagctcttcatgcagcagttaactttggacagtatcctt |
6456154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 7458030 - 7457983
Alignment:
| Q |
234 |
atatggattgcttcagctctacatgcagctgtaaactttggacaatat |
281 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || |||||||||||| |
|
|
| T |
7458030 |
atatggattgcttcagcacttcatgcagctgttaattttggacaatat |
7457983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 7470432 - 7470385
Alignment:
| Q |
234 |
atatggattgcttcagctctacatgcagctgtaaactttggacaatat |
281 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || |||||||||||| |
|
|
| T |
7470432 |
atatggattgcttcagcacttcatgcagctgttaattttggacaatat |
7470385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 6449741 - 6449687
Alignment:
| Q |
231 |
attatatggattgcttcagctctacatgcagctgtaaactttggacaatatcctt |
285 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||| || || ||||||||||||| |
|
|
| T |
6449741 |
attatatggactgcttctgctcttcatgcagctgttaatttcggacaatatcctt |
6449687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 6362174 - 6362125
Alignment:
| Q |
234 |
atatggattgcttcagctctacatgcagctgtaaactttggacaatatcc |
283 |
Q |
| |
|
||||||||||||||||| || |||||||| || || |||||||||||||| |
|
|
| T |
6362174 |
atatggattgcttcagcacttcatgcagcagttaattttggacaatatcc |
6362125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 494
Target Start/End: Complemental strand, 6261995 - 6261939
Alignment:
| Q |
438 |
atagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagt |
494 |
Q |
| |
|
|||||||| ||||| | ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
6261995 |
atagaaatattgtcgaggcatgcttctgatgagtactaccttggacaaagagacagt |
6261939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 6409177 - 6409129
Alignment:
| Q |
237 |
tggattgcttcagctctacatgcagctgtaaactttggacaatatcctt |
285 |
Q |
| |
|
||||| |||||||| || ||||||||||| || |||||||||||||||| |
|
|
| T |
6409177 |
tggatggcttcagcacttcatgcagctgttaattttggacaatatcctt |
6409129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 9606278 - 9606339
Alignment:
| Q |
234 |
atatggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggtta |
295 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||| || |||||||||||||||| || |||||| |
|
|
| T |
9606278 |
atatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggtta |
9606339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 42692217 - 42692174
Alignment:
| Q |
234 |
atatggattgcttcagctctacatgcagctgtaaactttggaca |
277 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || |||||||| |
|
|
| T |
42692217 |
atatggattgcttcagctcttcatgcagctgttaattttggaca |
42692174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 490
Target Start/End: Original strand, 42689835 - 42689887
Alignment:
| Q |
438 |
atagaaattttgtctacacattcttctgatgaggtctaccttggacaaagaga |
490 |
Q |
| |
|
|||||||| ||||| | |||| |||||||||| || ||||||||||||||||| |
|
|
| T |
42689835 |
atagaaatattgtcaagacatgcttctgatgaagtttaccttggacaaagaga |
42689887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 42692298 - 42692254
Alignment:
| Q |
153 |
ggtcacggcgacaagaaaaacgagccttggtggccaaagatgcaa |
197 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||| ||||||||| |
|
|
| T |
42692298 |
ggtcacggtgataagaaaaacgagccatggtggcctaagatgcaa |
42692254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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