View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1852_low_30 (Length: 305)

Name: NF1852_low_30
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1852_low_30
NF1852_low_30
[»] chr3 (39 HSPs)
chr3 (18-288)||(36538049-36538319)
chr3 (9-227)||(50677238-50677456)
chr3 (17-218)||(42009195-42009396)
chr3 (16-211)||(27303116-27303310)
chr3 (52-218)||(46904707-46904873)
chr3 (29-211)||(7767005-7767190)
chr3 (29-218)||(51146880-51147068)
chr3 (28-184)||(48626996-48627152)
chr3 (29-188)||(25599049-25599208)
chr3 (29-181)||(28132705-28132857)
chr3 (74-188)||(52655085-52655200)
chr3 (74-188)||(51939517-51939633)
chr3 (28-188)||(54430493-54430654)
chr3 (74-193)||(29387711-29387831)
chr3 (28-188)||(21784745-21784907)
chr3 (28-181)||(23164541-23164695)
chr3 (74-188)||(13401446-13401562)
chr3 (28-188)||(18408132-18408293)
chr3 (43-190)||(1255013-1255158)
chr3 (29-176)||(46791671-46791819)
chr3 (74-188)||(24252607-24252722)
chr3 (88-190)||(40152091-40152193)
chr3 (28-190)||(21596276-21596438)
chr3 (29-188)||(41707014-41707177)
chr3 (74-188)||(8364159-8364275)
chr3 (43-184)||(1649798-1649939)
chr3 (46-190)||(19965841-19965985)
chr3 (94-208)||(15987207-15987321)
chr3 (29-188)||(23067686-23067847)
chr3 (30-190)||(43905814-43905964)
chr3 (73-188)||(27729731-27729847)
chr3 (105-188)||(6715457-6715540)
chr3 (90-188)||(20762052-20762151)
chr3 (46-169)||(21660455-21660572)
chr3 (43-162)||(4207347-4207460)
chr3 (241-272)||(16319788-16319819)
chr3 (241-272)||(18500782-18500813)
chr3 (241-272)||(18511864-18511895)
chr3 (240-285)||(22022275-22022321)
[»] chr4 (26 HSPs)
chr4 (18-210)||(35653921-35654113)
chr4 (16-185)||(43154754-43154923)
chr4 (18-218)||(22423615-22423817)
chr4 (28-218)||(21791481-21791670)
chr4 (28-185)||(5545270-5545427)
chr4 (74-208)||(10575466-10575600)
chr4 (28-190)||(45172606-45172767)
chr4 (28-190)||(34982165-34982327)
chr4 (74-188)||(32130752-32130867)
chr4 (18-161)||(24449055-24449200)
chr4 (29-188)||(23426128-23426288)
chr4 (89-188)||(41038252-41038352)
chr4 (28-190)||(55134149-55134312)
chr4 (29-188)||(27632340-27632500)
chr4 (29-188)||(28463550-28463710)
chr4 (74-188)||(53011699-53011814)
chr4 (74-188)||(44478026-44478142)
chr4 (74-188)||(19661366-19661481)
chr4 (74-188)||(23256581-23256695)
chr4 (30-181)||(29579823-29579975)
chr4 (74-188)||(11681704-11681819)
chr4 (74-188)||(11689983-11690098)
chr4 (74-188)||(29221583-29221698)
chr4 (89-188)||(16072596-16072700)
chr4 (126-184)||(51066389-51066449)
chr4 (241-272)||(14706825-14706856)
[»] chr1 (42 HSPs)
chr1 (23-228)||(42740046-42740251)
chr1 (29-195)||(37873718-37873884)
chr1 (30-211)||(17674294-17674475)
chr1 (32-211)||(44836665-44836840)
chr1 (78-218)||(13120799-13120939)
chr1 (28-218)||(22386769-22386960)
chr1 (28-190)||(12971347-12971509)
chr1 (18-218)||(24556737-24556937)
chr1 (33-208)||(50371080-50371255)
chr1 (18-211)||(26486313-26486498)
chr1 (28-188)||(27703492-27703652)
chr1 (74-193)||(12884095-12884214)
chr1 (29-188)||(10109662-10109822)
chr1 (74-188)||(18127899-18128014)
chr1 (74-188)||(48722332-48722447)
chr1 (30-208)||(5560426-5560605)
chr1 (89-193)||(9-114)
chr1 (89-188)||(30899658-30899760)
chr1 (28-190)||(15441231-15441393)
chr1 (74-188)||(29208060-29208175)
chr1 (89-179)||(33124601-33124692)
chr1 (29-181)||(6150663-6150816)
chr1 (88-181)||(30004877-30004970)
chr1 (89-188)||(20905249-20905349)
chr1 (74-181)||(28885640-28885748)
chr1 (74-181)||(50552482-50552590)
chr1 (89-188)||(25930606-25930705)
chr1 (28-147)||(38263805-38263924)
chr1 (74-181)||(51110070-51110178)
chr1 (89-188)||(52055554-52055654)
chr1 (93-187)||(14084663-14084759)
chr1 (74-181)||(17487252-17487360)
chr1 (77-190)||(9777403-9777516)
chr1 (88-161)||(3907472-3907545)
chr1 (93-184)||(6333483-6333574)
chr1 (110-190)||(1269574-1269652)
chr1 (28-108)||(31369432-31369512)
chr1 (127-181)||(31369374-31369428)
chr1 (241-272)||(16844050-16844081)
chr1 (89-132)||(32810370-32810413)
chr1 (75-130)||(3547674-3547730)
chr1 (133-188)||(52240498-52240554)
[»] chr7 (35 HSPs)
chr7 (18-218)||(26633294-26633494)
chr7 (23-211)||(36438291-36438479)
chr7 (18-218)||(7366618-7366818)
chr7 (18-211)||(18895337-18895530)
chr7 (29-168)||(9479069-9479208)
chr7 (28-190)||(1365950-1366112)
chr7 (29-190)||(32956717-32956878)
chr7 (23-210)||(40737941-40738119)
chr7 (29-188)||(30739065-30739224)
chr7 (28-161)||(26282532-26282665)
chr7 (29-188)||(33910006-33910166)
chr7 (30-151)||(40001696-40001817)
chr7 (28-190)||(42311951-42312112)
chr7 (74-188)||(36796333-36796449)
chr7 (74-188)||(12251250-12251365)
chr7 (74-188)||(18015542-18015659)
chr7 (76-171)||(41908167-41908262)
chr7 (28-208)||(28590087-28590263)
chr7 (89-181)||(46221672-46221765)
chr7 (74-181)||(4099955-4100063)
chr7 (29-188)||(6380046-6380206)
chr7 (74-188)||(7636287-7636403)
chr7 (89-188)||(44893991-44894091)
chr7 (52-184)||(773849-773983)
chr7 (28-193)||(40841203-40841369)
chr7 (89-181)||(11672588-11672681)
chr7 (25-181)||(3799731-3799884)
chr7 (74-181)||(42161091-42161197)
chr7 (89-181)||(33419086-33419180)
chr7 (25-188)||(41852263-41852424)
chr7 (88-184)||(44876123-44876218)
chr7 (112-190)||(25610091-25610169)
chr7 (29-151)||(8358294-8358416)
chr7 (30-141)||(25061846-25061957)
chr7 (18-94)||(25610022-25610098)
[»] chr8 (29 HSPs)
chr8 (18-218)||(3628680-3628880)
chr8 (28-190)||(34523912-34524074)
chr8 (28-190)||(32098139-32098301)
chr8 (28-190)||(39697899-39698061)
chr8 (30-190)||(23567235-23567395)
chr8 (28-190)||(12531500-12531662)
chr8 (18-161)||(35874855-35875000)
chr8 (28-184)||(5869289-5869443)
chr8 (74-181)||(18420578-18420686)
chr8 (29-188)||(43926285-43926445)
chr8 (74-188)||(3471587-3471702)
chr8 (74-188)||(13585286-13585401)
chr8 (89-188)||(18112118-18112219)
chr8 (105-218)||(36515088-36515202)
chr8 (74-218)||(29372344-29372488)
chr8 (89-188)||(1004060-1004162)
chr8 (46-211)||(42076066-42076233)
chr8 (89-181)||(43968039-43968132)
chr8 (74-188)||(44665008-44665123)
chr8 (29-170)||(30915268-30915410)
chr8 (89-188)||(7858087-7858187)
chr8 (74-181)||(27074561-27074669)
chr8 (89-188)||(42951727-42951831)
chr8 (74-190)||(33452778-33452894)
chr8 (105-208)||(42777763-42777866)
chr8 (95-190)||(2545887-2545977)
chr8 (241-272)||(24439927-24439958)
chr8 (116-174)||(3575117-3575175)
chr8 (88-169)||(5971742-5971819)
[»] chr5 (33 HSPs)
chr5 (16-211)||(138073-138267)
chr5 (23-218)||(17325780-17325976)
chr5 (16-218)||(10033476-10033677)
chr5 (29-190)||(42291842-42292003)
chr5 (43-218)||(18873409-18873591)
chr5 (28-190)||(4734543-4734705)
chr5 (28-190)||(43511559-43511721)
chr5 (29-182)||(20975927-20976080)
chr5 (30-190)||(17513897-17514057)
chr5 (28-190)||(3349690-3349851)
chr5 (28-193)||(5829326-5829489)
chr5 (28-190)||(10591234-10591396)
chr5 (28-190)||(29156131-29156293)
chr5 (28-190)||(40956254-40956416)
chr5 (91-191)||(7390360-7390460)
chr5 (41-162)||(16515478-16515599)
chr5 (89-193)||(13656212-13656317)
chr5 (28-183)||(40779133-40779288)
chr5 (74-188)||(13474617-13474732)
chr5 (30-208)||(27351292-27351470)
chr5 (89-181)||(19099283-19099376)
chr5 (74-188)||(12661296-12661411)
chr5 (89-188)||(13423866-13423966)
chr5 (29-181)||(26377742-26377896)
chr5 (88-190)||(931381-931478)
chr5 (90-175)||(33281677-33281762)
chr5 (74-181)||(36718535-36718644)
chr5 (140-187)||(8379406-8379453)
chr5 (46-144)||(23069179-23069277)
chr5 (130-181)||(26312027-26312079)
chr5 (88-132)||(37029051-37029095)
chr5 (240-285)||(34138387-34138433)
chr5 (29-110)||(26311948-26312029)
[»] chr2 (37 HSPs)
chr2 (18-211)||(39081329-39081521)
chr2 (28-218)||(36059838-36060028)
chr2 (29-218)||(29480570-29480759)
chr2 (18-216)||(13997245-13997442)
chr2 (18-211)||(1418841-1419033)
chr2 (30-190)||(21747191-21747351)
chr2 (44-195)||(38599359-38599509)
chr2 (28-190)||(18172901-18173062)
chr2 (18-188)||(27302491-27302661)
chr2 (28-188)||(38985672-38985831)
chr2 (28-190)||(15457441-15457604)
chr2 (29-190)||(17117606-17117759)
chr2 (30-190)||(18916015-18916175)
chr2 (29-188)||(19367381-19367541)
chr2 (74-193)||(26151704-26151824)
chr2 (51-190)||(31273127-31273265)
chr2 (89-188)||(41096499-41096600)
chr2 (74-181)||(4855980-4856088)
chr2 (74-181)||(6530646-6530754)
chr2 (74-181)||(13020410-13020518)
chr2 (18-188)||(34061818-34061989)
chr2 (74-188)||(7993619-7993735)
chr2 (28-188)||(42411520-42411681)
chr2 (74-181)||(2063792-2063900)
chr2 (29-179)||(45042331-45042485)
chr2 (74-188)||(45618964-45619078)
chr2 (89-188)||(18676272-18676373)
chr2 (28-183)||(1226234-1226388)
chr2 (89-188)||(25222325-25222425)
chr2 (105-188)||(42759718-42759802)
chr2 (74-181)||(12269412-12269519)
chr2 (47-169)||(18482488-18482611)
chr2 (125-188)||(36481432-36481496)
chr2 (43-163)||(12072456-12072570)
chr2 (22-90)||(32186211-32186279)
chr2 (105-190)||(13001655-13001740)
chr2 (234-282)||(27157868-27157917)
[»] chr6 (31 HSPs)
chr6 (29-211)||(3748508-3748690)
chr6 (29-210)||(30915302-30915488)
chr6 (28-190)||(1093002-1093163)
chr6 (28-190)||(29308428-29308590)
chr6 (28-188)||(2618296-2618457)
chr6 (73-190)||(628055-628173)
chr6 (28-182)||(19231554-19231707)
chr6 (89-193)||(21946109-21946213)
chr6 (28-163)||(1690621-1690756)
chr6 (74-188)||(12614678-12614793)
chr6 (112-218)||(6294279-6294385)
chr6 (28-188)||(6754147-6754308)
chr6 (74-188)||(57675-57790)
chr6 (74-188)||(6360747-6360861)
chr6 (30-151)||(31860946-31861065)
chr6 (89-188)||(29149405-29149505)
chr6 (89-188)||(29401142-29401242)
chr6 (74-188)||(3514812-3514927)
chr6 (56-180)||(350383-350508)
chr6 (74-188)||(7525128-7525243)
chr6 (95-188)||(22503751-22503845)
chr6 (18-106)||(7341140-7341228)
chr6 (89-156)||(14893412-14893479)
chr6 (105-180)||(11088564-11088640)
chr6 (43-132)||(31234869-31234956)
chr6 (23-94)||(6294215-6294286)
chr6 (88-132)||(1327594-1327638)
chr6 (241-272)||(22944500-22944531)
chr6 (241-272)||(23866944-23866975)
chr6 (43-132)||(31244006-31244092)
chr6 (241-285)||(24405090-24405135)
[»] scaffold0126 (1 HSPs)
scaffold0126 (29-188)||(16652-16812)
[»] scaffold0181 (1 HSPs)
scaffold0181 (89-181)||(17101-17194)
[»] scaffold0606 (1 HSPs)
scaffold0606 (74-190)||(8354-8472)
[»] scaffold0100 (1 HSPs)
scaffold0100 (74-181)||(46143-46250)
[»] scaffold0035 (2 HSPs)
scaffold0035 (112-188)||(22767-22844)
scaffold0035 (228-287)||(57728-57788)
[»] scaffold0564 (1 HSPs)
scaffold0564 (112-188)||(1086-1163)
[»] scaffold0065 (1 HSPs)
scaffold0065 (241-272)||(26173-26204)
[»] scaffold0084 (1 HSPs)
scaffold0084 (240-285)||(23985-24031)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 36538319 - 36538049
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| |||||||||| | | ||||| |||||| |||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  36538319 acacgtatgagttttttctaaactctagttatactttatggacataaacttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 36538220  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36538219 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacg 36538120  T
Q  218 atgctgttaggctaacaatataatgtggcattgccatagctcagcttatgggggcaccatagtggagatag 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36538119 atgctgttaggctaacaatataatgtggcattgccatagctcagcttatgggggcaccatagtggagatag 36538049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 50677456 - 50677238
Alignment:
Q  9 ctctacgggacacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaat 108  Q
    |||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50677456 ctcttcgggacacatatgggtttttcctagactttagttatactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaat 50677357  T
Q  109 cagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgaca 208  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  50677356 cagtcaatttgaaaaactatttcattgaaacaatcacaacaattatttctttttcgcataaacaattcgttttcccctttcctacgatgtaggagtgaca 50677257  T
Q  209 ttctaaacgatgctgttag 227  Q
    ||| ||||||  |||||||    
T  50677256 ttccaaacgaaactgttag 50677238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 42009396 - 42009195
Alignment:
Q  17 gacacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaat 116  Q
    ||||| |||| ||||||| |||| ||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  42009396 gacacgtatgagttttttttagactttagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaat 42009297  T
Q  117 ttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaac 216  Q
    || ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||||| ||||    
T  42009296 ttaaaaagttatttcattgaaagaatcacaacaattatttctttttcacataaaccattcgttttcccctttcctacgacgtaagagtgacattccaaac 42009197  T
Q  217 ga 218  Q
    ||    
T  42009196 ga 42009195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 27303116 - 27303310
Alignment:
Q  16 ggacacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaa 115  Q
    |||||| |||| |||||||||||| | || ||||||||| |||||| ||||||| ||  || ||||||||||||||||||||||||||||||||| ||||    
T  27303116 ggacacgtatgtgttttttctagactctacttctactttatggacataaatttgatgccatgaaaccaccatcaatttgtataatcacttaatcaatcaa 27303215  T
Q  116 tttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| | |||||||||||||    
T  27303216 tttgaaaagctatttcattgaaagaatcacaacaattatttctttttcgcataaactatttgtttt-ccctttcctacgacgtaggagtgacattc 27303310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 52 - 218
Target Start/End: Original strand, 46904707 - 46904873
Alignment:
Q  52 tttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaat 151  Q
    |||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46904707 tttctggacatagatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaaactatttcattgaaagaatcacaacaat 46904806  T
Q  152 tatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacga 218  Q
    ||||||||||| ||||||||| ||  |||| ||||||||||||| | ||||||||||||| ||||||    
T  46904807 tatttcttttttgcataaaccttttatttttccctttcctacgacgtaggagtgacattccaaacga 46904873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 7767005 - 7767190
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| |  |||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  7767005 ttttttctagactccagttctactttctggacataaatttgatgctatcaaacaaccatcaatttgtataatcacttaatcagtcaatttgaaaagctat 7767104  T
Q  129 ttcattgaaagaatcacaacaattatttcttt---ttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
    |||||||||||||||||||||||||||| |||   ||| ||||||| |||||||||||| ||||||| || | |||||||||||||    
T  7767105 ttcattgaaagaatcacaacaattatttttttttcttcacataaactattcgttttcccatttcctaagacgtaggagtgacattc 7767190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 51146880 - 51147068
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||||| |||||| ||||| |||||| ||||||| || ||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  51146880 ttttttctagattctagttccactttttggacataaatttgatgctattaaaccaccatcaatttgaata-tcacttaatcagtcaatttaaaaaactat 51146978  T
Q  129 ttcattgaaagaatcacaacaattatttctt-tttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacga 218  Q
    || ||||||||||||||||||||||||| || | |||||||||||||||||||| |||||| ||||||   || |||||||||| ||||||    
T  51146979 tttattgaaagaatcacaacaattattttttctctcgcataaaccattcgtttt-cccttttctacgacatagaagtgacattccaaacga 51147068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 48627152 - 48626996
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| |||||||||  | |||||||| |||| || |  ||||| ||||||  |||||||||||||||||| ||||||||||||||||| |||    
T  48627152 gttttttctagactttagttctcatatctggacataaatctgatactatcagaccaccgccaatttgtataatcacttgatcagtcaatttgaaaatcta 48627053  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccc 184  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  48627052 tttcattgaaagaatcacaacaatcatttatttttcacataaaccattcgttttccc 48626996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 25599208 - 25599049
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    |||||| |||| | ||||||| |||| || ||| |||| || |  ||||||||||||   ||||| ||||||||||||||||||||||||||||||||||    
T  25599208 ttttttttagactctagttctcctttttgtacataaatctgattctatcaaaccacctctaatttatataatcacttaatcagtcaatttgaaaaactat 25599109  T
Q  129 ttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||| || | || ||||||||||||||||||||| ||||||    
T  25599108 ttcattgaaagaatcacaacaatcatgttttcttcgcataaaccattcgttttacccttt 25599049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 28132857 - 28132705
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||| |||| || ||| ||||  | |  ||||||| |||| | ||||||||||||||||||||||||||||||| ||| ||||    
T  28132857 ttttttctagactctagttctcctttttgtacataaatcagatcctatcaaatcacccttaatttgtataatcacttaatcagtcaatttggaaagctat 28132758  T
Q  129 ttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgtttt 181  Q
    ||||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  28132757 ttcattgaaagaatcacaacaatcattttttcttcgcataaaccattcgtttt 28132705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 52655200 - 52655085
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||  |||||||||||    
T  52655200 tatcaaaccaccactaatttgtataatcacttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcctcgcataaacc 52655101  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  52655100 attcgttttacccttt 52655085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 51939633 - 51939517
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaac 171  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||  ||| |||||||    
T  51939633 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcattttttttcttcacataaac 51939534  T
Q  172 cattcgttttccccttt 188  Q
    |||||||||| ||||||    
T  51939533 cattcgttttacccttt 51939517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 54430493 - 54430654
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||  | ||||||| |||| || ||| |||| || |||||||||||||||   |||||||||||||||||||||||||||||||||||  ||    
T  54430493 gttttttctaggctctagttctcctttttgtacataaatctgatgttatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagtta 54430592  T
Q  128 tttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    ||||||| |||||||  ||||||| |||| ||| ||||||||||||||||||||| ||||||    
T  54430593 tttcattaaaagaattgcaacaatcatttttttcttcgcataaaccattcgttttacccttt 54430654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 29387831 - 29387711
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   |||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  29387831 tatcaaaccacccctaatttgtataatcacttaatcaatcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 29387732  T
Q  173 attcgttttcccctttcctac 193  Q
    ||||||||| |||||| ||||    
T  29387731 attcgttttacccttttctac 29387711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 21784907 - 21784745
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | ||||||| |||| || ||| ||||  | |  ||||||||||||   |||||||||||||||||||||||| |||||| ||| |||    
T  21784907 gttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagttaatttggaaagcta 21784808  T
Q  128 tttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccattcgttttccccttt 188  Q
    |||||||||||||||||||||||| |||| |||  ||||||||||||||||||||| ||||||    
T  21784807 tttcattgaaagaatcacaacaatcattttttttcttcgcataaaccattcgttttacccttt 21784745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 23164695 - 23164541
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | ||||||| |||| || ||| |||| || |  ||||||||||||   |||||||||||||||||||||| |||||||| ||  |||    
T  23164695 gttttttctagactctagttctcctttttgtacataaatctgatcctatcaaaccacccctaatttgtataatcacttaatcaatcaatttggaagtcta 23164596  T
Q  128 tttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgtttt 181  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  23164595 tttcattgaaagaatcacaacaataatttttttcttcgcataaaccattcgtttt 23164541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 13401446 - 13401562
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttttt--cgcataaac 171  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||  |||||||||    
T  13401446 tatcaaaccactcttaatttgtataatcacttaatcagtcaatttgaaaagctatttcattggaagaatcacaacaatcatttttttttcccgcataaac 13401545  T
Q  172 cattcgttttccccttt 188  Q
    |||| ||||| ||||||    
T  13401546 catttgttttacccttt 13401562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 18408132 - 18408293
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| |||||||||  ||| || ||| ||||  | |  ||||||||||||   ||||||||||||||||||||||||||||||||||| |||    
T  18408132 gttttttctagactttagttctcatttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagcta 18408231  T
Q  128 tttcattgaaagaatcacaacaatta-tttctttttcgcataaaccattcgttttccccttt 188  Q
     | ||||||||||||||||||||| | ||| |||||||||||||| ||||||||| ||||||    
T  18408232 atccattgaaagaatcacaacaatcattttttttttcgcataaacaattcgttttacccttt 18408293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 1255158 - 1255013
Alignment:
Q  43 tagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaat 142  Q
    ||||||| |||| |||||| |||| || || |||||||| ||| | |||||||||||| |||||||| ||||||||  |||  |||||||||||||||||    
T  1255158 tagttcttctttttggacataaatctgatgctatcaaacgacctttaatttgtataatgacttaatcggtcaatttagaaagttatttcattgaaagaat 1255059  T
Q  143 cacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
      ||||||| |||| |||||||||||||||||||||||||||||||||    
T  1255058 --caacaataatttgtttttcgcataaaccattcgttttcccctttcc 1255013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 46791819 - 46791671
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||| |||| || ||| ||||  | |  ||||||||||||   ||||||||||||||||||||||||||||||| ||||||||    
T  46791819 ttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacctctaatttgtataatcacttaatcagtcaatttggaaaactat 46791720  T
Q  129 ttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattc 176  Q
    ||||||| ||||||||||||||| |||| ||| ||||||||||||||||    
T  46791719 ttcattgcaagaatcacaacaatcatttttttcttcgcataaaccattc 46791671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 24252607 - 24252722
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    |||||||||||| | ||||||||||||||||||||||||||||||| |||  ||||||| || ||||||||||||||| |||| ||| ||||||||||||    
T  24252607 tatcaaaccacccttaatttgtataatcacttaatcagtcaatttggaaagttatttcagtgcaagaatcacaacaatcatttttttcttcgcataaacc 24252706  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  24252707 attcgttttacccttt 24252722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 40152193 - 40152091
Alignment:
Q  88 caatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaa-gaatcacaacaattatttctttttcgcataaaccattcgttttcccct 186  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||| | ||||||||    
T  40152193 caatttgtataatcacttaatcggtcaatttgaaaaactatttcattaaaacgaatcacaacaatcatttcttttgcgcataaaccatttg-tttcccct 40152095  T
Q  187 ttcc 190  Q
    ||||    
T  40152094 ttcc 40152091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 21596276 - 21596438
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | || |||| ||||||||||| ||||  | || |||||||||||   |||||||||||||||||||||||||| ||||| ||| |||    
T  21596276 gttttttctagactctaattctcctttctggacataaatcagatgctatcaaaccactcccaatttgtataatcacttaatcagtcgatttggaaagcta 21596375  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||  ||||||||||||||| |||| ||||| ||  |||||||| ||||| ||||||||    
T  21596376 tttcattacaagaatcacaacaatcatttattttttgctcaaaccatttgtttttccctttcc 21596438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 41707177 - 41707014
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||| |||| || ||| ||||  | |  ||||||||||||   |||||| |||||||||||||||||||||||||||| ||||    
T  41707177 ttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgcataatcacttaatcagtcaatttgaaaagctat 41707078  T
Q  129 ttcattgaaagaatcacaacaattatttcttt----ttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||| |||| |||    ||||||||||||||||| ||| ||||||    
T  41707077 ttcattgaaagaatcacaacaatcattttttttttcttcgcataaaccattcgctttacccttt 41707014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 8364159 - 8364275
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaac 171  Q
    ||||||||||||   ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| |||| |||  |||||| ||||    
T  8364159 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagttatttcattgaaagaatcacaacaatcattttttttcttcgcacaaac 8364258  T
Q  172 cattcgttttccccttt 188  Q
    |||| ||||| ||||||    
T  8364259 catttgttttacccttt 8364275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 184
Target Start/End: Complemental strand, 1649939 - 1649798
Alignment:
Q  43 tagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaat 142  Q
    |||||||  ||||| |||| |||| || || ||||||| ||||  ||||||||||||||||||||||| |||||||||||| |||||||| ||||||  |    
T  1649939 tagttctcttttctagacataaatctggtgctatcaaatcacccccaatttgtataatcacttaatcattcaatttgaaaatctatttcactgaaagctt 1649840  T
Q  143 cacaacaattatttctttttcgcataaaccattcgttttccc 184  Q
    | ||||||| | |||||||| |||||| ||||| ||||||||    
T  1649839 cgcaacaatcaattcttttttgcataagccatttgttttccc 1649798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 19965985 - 19965841
Alignment:
Q  46 ttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcac 145  Q
    |||| |||| |||||| |||| || || |||||||||||   ||||||||||||||||||||| ||| || ||||||| |||||||||| ||||||||||    
T  19965985 ttctcctttttggacataaatctgatgctatcaaaccactgccaatttgtataatcacttaattagttaaattgaaaagctatttcattaaaagaatcac 19965886  T
Q  146 -aacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
     |||||| |||| |||  |||||||||||||||||||| |||||||    
T  19965885 aaacaatcattt-tttcccgcataaaccattcgttttctcctttcc 19965841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 15987207 - 15987321
Alignment:
Q  94 gtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctac 193  Q
    ||||||||||||||||| |||||||  |||  ||||||||| ||||||| ||||| || |||| |||||||||||||||||||||||| |||||||| ||    
T  15987207 gtataatcacttaatcattcaatttcgaaagttatttcattaaaagaattacaactatcatttatttttcgcataaaccattcgtttttccctttcccac 15987306  T
Q  194 gaagcaggagtgaca 208  Q
     | | ||||||||||    
T  15987307 aacggaggagtgaca 15987321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 23067847 - 23067686
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| ||||||||| |||| || ||| ||||  | |  ||||||||||||   ||||||||||||||||| | |||||||||||||||  |||    
T  23067847 ttttttctagactttagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttcaccagtcaatttgaaaagttat 23067748  T
Q  129 ttcattgaaagaatcaca-acaattatttctt-tttcgcataaaccattcgttttccccttt 188  Q
    |||||| ||||||||||| ||||| |||| ||  ||||||||||||||| ||||| ||||||    
T  23067747 ttcatttaaagaatcacacacaatcattttttaattcgcataaaccatttgttttacccttt 23067686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 43905964 - 43905814
Alignment:
Q  30 tttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 129  Q
    ||||| |||| ||||||||| || |||||||| |||| || |  |||||||| ||| |||||||||||||||||| ||||||||||||||||||  ||||    
T  43905964 tttttttagactttagttctcctatctggacataaatctggtactatcaaactaccctcaatttgtataatcactcaatcagtcaatttgaaaagttatt 43905865  T
Q  130 tcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||          ||||||||| ||||||||||| |||||||||||| |||| ||||||||    
T  43905864 tca----------cacaacaatcatttctttttcacataaaccattcatttttccctttcc 43905814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 27729847 - 27729731
Alignment:
Q  73 ttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatt-tctttttcgcataaac 171  Q
    |||||||||||||   ||||||||||||||| |||||| |||||||| ||| | |||| || ||||||||||||||||| ||| | || |||||||||||    
T  27729847 ttatcaaaccacccctaatttgtataatcacataatcaatcaatttggaaagcaatttgatcgaaagaatcacaacaatcattattttcttcgcataaac 27729748  T
Q  172 cattcgttttccccttt 188  Q
    |||||||||| ||||||    
T  27729747 cattcgttttacccttt 27729731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 6715457 - 6715540
Alignment:
Q  105 taatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||  |||  ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||    
T  6715457 taatcagtcaattttgaaagttatttcattgaaagaatcataacaatcatttttttttcgcataaaccattcgttttacccttt 6715540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 20762052 - 20762151
Alignment:
Q  90 atttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    |||||||||||||||| |||||| |||||| ||  |||||||||||||||||||| |||||| |||| |||  |||||||||||||||||||| ||||||    
T  20762052 atttgtataatcacttgatcagttaatttggaagtctatttcattgaaagaatcataacaatcatttttttcgtcgcataaaccattcgttttacccttt 20762151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 21660455 - 21660572
Alignment:
Q  46 ttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcac 145  Q
    |||| |||| ||||||| |||||  || |||||||||| ||  ||| |||||||||||||||||| ||||||| ||||| ||||||    ||||||||||    
T  21660455 ttctcctttttggacaagaatttaatgctatcaaaccatca--aatctgtataatcacttaatcaatcaatttaaaaaattatttc----aaagaatcac 21660548  T
Q  146 aacaattatttctttttcgcataa 169  Q
    || |||  ||||||||||||||||    
T  21660549 aataatcctttctttttcgcataa 21660572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 4207460 - 4207347
Alignment:
Q  43 tagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaat 142  Q
    ||||||| |||| ||||||| ||||   || |||||||||| |  ||||||||||||||||||||||| |||||||| |||  ||||||    |||||||    
T  4207460 tagttctcctttttggacaagaattcaatgctatcaaaccatc--caatttgtataatcacttaatcattcaatttggaaagatatttc----aaagaat 4207367  T
Q  143 cacaacaattatttcttttt 162  Q
    |||||||||  |||||||||    
T  4207366 cacaacaatcctttcttttt 4207347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 272
Target Start/End: Complemental strand, 16319819 - 16319788
Alignment:
Q  241 tgtggcattgccatagctcagcttatgggggc 272  Q
    ||||||||||||||||||||||||||||||||    
T  16319819 tgtggcattgccatagctcagcttatgggggc 16319788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 272
Target Start/End: Complemental strand, 18500813 - 18500782
Alignment:
Q  241 tgtggcattgccatagctcagcttatgggggc 272  Q
    ||||||||||||||||||||||||||||||||    
T  18500813 tgtggcattgccatagctcagcttatgggggc 18500782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 272
Target Start/End: Complemental strand, 18511895 - 18511864
Alignment:
Q  241 tgtggcattgccatagctcagcttatgggggc 272  Q
    ||||||||||||||||||||||||||||||||    
T  18511895 tgtggcattgccatagctcagcttatgggggc 18511864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 22022275 - 22022321
Alignment:
Q  240 atgtggcattgccatagctcagcttatgg-gggcaccatagtggaga 285  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||    
T  22022275 atgtggcactgccatagctcagcttatggaggccaccatagtggaga 22022321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 35654113 - 35653921
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| |||||||||||| | ||||||||||||||||||| |||| || || ||||||||||||||||||||||||||||||||||||| ||||||    
T  35654113 acacgtatgagttttttctagactctagttctactttctggacataaatatgatgctatcaaaccaccatcaatttgtataatcacttaatcaatcaatt 35654014  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacatt 210  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||||||    
T  35654013 tgaaaagctatttcattgaaagaatcacaacaattatttctttttcgcataaactattcgtttttccctttcctacgacgtaggagtgacatt 35653921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 43154923 - 43154754
Alignment:
Q  16 ggacacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaa 115  Q
    |||||| |||| |||||||||||||| |||||||||||| |||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  43154923 ggacacgtatgagttttttctagattctagttctactttttggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaa 43154824  T
Q  116 tttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccc 185  Q
    ||| ||||  ||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  43154823 tttaaaaagttatttcattaaaagaatcacaacaattatttatttttcgcataaatcattcgttttcccc 43154754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 22423615 - 22423817
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| |||||||||||| | ||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||||||| ||||||    
T  22423615 acacgtatgagttttttctagactctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtatgatcacttaatcaatcaatt 22423714  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttcttttt--cgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaa 215  Q
    ||||||||||||| ||||||||||||| ||||||||||| |||||  | |||||| |||||||||| || |||| |||||   ||||||||||||| |||    
T  22423715 tgaaaaactattttattgaaagaatcaaaacaattatttattttttccacataaatcattcgtttttccatttcatacgacataggagtgacattccaaa 22423814  T
Q  216 cga 218  Q
    |||    
T  22423815 cga 22423817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 21791670 - 21791481
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | ||||||| ||||||| ||| ||||||| ||  ||||||||||| ||||| |||||||||||||||||||||||||||||||  ||    
T  21791670 gttttttctagactctagttctcctttctgaacataaatttgatgccatcaaaccaccttcaatgtgtataatcacttaatcagtcaatttgaaaagtta 21791571  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacga 218  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||| | | |||||||| || ||||||    
T  21791570 tttcattgaaagaatcacaacaatcatttctttttcgcataaaccatttg-tttcccctttcccacgacgaatgagtgacaatccaaacga 21791481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 5545270 - 5545427
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | || |||| || |||||||| ||||||| ||  |||||||||||| |||||||||||||||||||||| ||||||||| ||| |||    
T  5545270 gttttttctagactctaattcttctgtctggacataaatttgatgccatcaaaccaccaccaatttgtataatcacttaatcggtcaatttggaaagcta 5545369  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccc 185  Q
    ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  5545370 tttcattaaaagaatcacaacaatcatttatttttcgcataaaccattcgttttcccc 5545427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 10575600 - 10575466
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaacca 173  Q
    |||||||||||| |||| |||||||||||||||||||||||||||  |||  ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  10575600 tatcaaaccaccctcaacttgtataatcacttaatcagtcaatttagaaagttatttcattgaaataatcacaacaatcatttctttttcgcataaacca 10575501  T
Q  174 ttcgttttcccctttcctacgaagcaggagtgaca 208  Q
    ||||||||||||||||| |||| | ||||||||||    
T  10575500 ttcgttttcccctttcccacgacggaggagtgaca 10575466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 45172767 - 45172606
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||||| |  |||||||| |||| || |  |||||||||||| | ||||||||||||||||||||||||||||||||||| |||    
T  45172767 gttttttctagactttagttctccaatctggacataaatctggtactatcaaaccaccct-aatttgtataatcacttaatcagtcaatttgaaaagcta 45172669  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||| ||||||||||||||||| |||||||||||  ||| |||||||||||||||||||||    
T  45172668 tttcatggaaagaatcacaacaatcatttctttttcatatagaccattcgttttcccctttcc 45172606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 34982165 - 34982327
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||| | || |||||||| |||| || |  || ||||||| |  |||||||||||||||||||||||||||||| |||||||||    
T  34982165 gttttttctagactttagtttttctatctggacataaatctggtactaacaaaccatccccaatttgtataatcacttaatcagtcaattggaaaaacta 34982264  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||| |||||||||||||||||||||||||||||||  ||||| |||| ||||||||||||||    
T  34982265 tttcgttgaaagaatcacaacaattatttctttttcatataaatcatttgttttcccctttcc 34982327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 32130867 - 32130752
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  32130867 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 32130768  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  32130767 attcgttttacccttt 32130752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 24449055 - 24449200
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccat--caatttgtataatcacttaatcagtcaa 115  Q
    |||| |||| |||||||||||| | ||||||||||||||||| | ||||||| || ||||||||||| ||  |||||||||||||||||||||| |||||    
T  24449055 acacgtatgagttttttctagactctagttctactttctggatataaatttgatgctatcaaaccactatatcaatttgtataatcacttaatcggtcaa 24449154  T
Q  116 tttgaaaaactatttcattgaaagaatcacaacaattatttctttt 161  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||    
T  24449155 tttgaaaaactatttcttagaaagaaccacaacaattatttctttt 24449200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 23426288 - 23426128
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||| |||| || ||| ||||  | |  ||||||||||||   ||||||||||||||||||||||||||||||| ||| ||||    
T  23426288 ttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacctctaatttgtataatcacttaatcagtcaatttggaaagctat 23426189  T
Q  129 ttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||    
T  23426188 ttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttt 23426128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 41038252 - 41038352
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttcccctt 187  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  41038252 aatttgtataatcacttaatcagtcaatttggaaaactatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccctt 41038351  T
Q  188 t 188  Q
    |    
T  41038352 t 41038352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 55134149 - 55134312
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    ||||||| |||| |||||||||  | |||||||| ||||||| |  ||||||||||| | ||||| ||||||| |||||||||||||||||||||| |||    
T  55134149 gttttttgtagactttagttctcttatctggacataaatttggtactatcaaaccactaccaattggtataatgacttaatcagtcaatttgaaaagcta 55134248  T
Q  128 tttcattgaaagaatcacaacaattatttc-tttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||| ||||||||||||||||| ||||| |||||  |||||| ||||||||||||| |||||    
T  55134249 tttcatagaaagaatcacaacaatcatttctttttttacataaatcattcgttttcccttttcc 55134312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 27632340 - 27632500
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||||| ||||||| |||| || ||| ||||||| |  ||||||||||||   |||||||||||||||||||| |||||||||||||| |||     
T  27632340 ttttttctagattctagttctcctttttgtacataaatttgatcctatcaaaccacccctaatttgtataatcacttaattagtcaatttgaaaagctac 27632439  T
Q  129 ttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    |||||||||||||||||| |||| |||| ||| |||||||||| |||||| ||| ||||||    
T  27632440 ttcattgaaagaatcacatcaatcatttttttcttcgcataaatcattcgctttacccttt 27632500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 28463710 - 28463550
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||| |||| || ||| ||||  | | |||||||||||||   |||||||||||||||||||||| |||| ||||||| ||||    
T  28463710 ttttttctagactctagttctcctttttgtacataaatcggatcttatcaaaccacccctaatttgtataatcacttaatcaatcaagttgaaaagctat 28463611  T
Q  129 ttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||||||||| ||||||    
T  28463610 ttcattgaaaaaatcacaacaatcatttttttcttcgcataaaccattcgttttgcccttt 28463550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 53011699 - 53011814
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |||| ||| ||||||||||||    
T  53011699 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattaaaagaatcacaacaatcatttttttcttcgcataaacc 53011798  T
Q  173 attcgttttccccttt 188  Q
    |||| |||| ||||||    
T  53011799 attcattttacccttt 53011814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 44478026 - 44478142
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaac 171  Q
    ||||||||||||   |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||  |||||||||||    
T  44478026 tatcaaaccacccataatttgtataatcactaaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcattttttttcttcgcataaac 44478125  T
Q  172 cattcgttttccccttt 188  Q
     ||||||||| ||||||    
T  44478126 tattcgttttacccttt 44478142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 19661366 - 19661481
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||  ||| ||| || |||||||||    
T  19661366 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattgaaagaaacacaacaatcctttttttctttgcataaacc 19661465  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  19661466 attcgttttacccttt 19661481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 23256581 - 23256695
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaacca 173  Q
    ||||||||||||   ||||||||||| ||||||||||||||||||  ||| |||||||| |||||||||||||||||| |||| || ||| |||||||||    
T  23256581 tatcaaaccacccctaatttgtataaccacttaatcagtcaatttagaaagctatttcaatgaaagaatcacaacaatcattttttcttcccataaacca 23256680  T
Q  174 ttcgttttccccttt 188  Q
    |||||||| ||||||    
T  23256681 ttcgttttacccttt 23256695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 29579823 - 29579975
Alignment:
Q  30 tttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 129  Q
    |||||||||| | |||||||| ||| || ||| |||| || |  ||||||||||||   |||||||||||| | |||||||||||| ||||||| |||||    
T  29579823 tttttctagactctagttctattttttgtacataaatctgatcctatcaaaccacccataatttgtataattaattaatcagtcaaattgaaaagctatt 29579922  T
Q  130 tcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgtttt 181  Q
    ||| |||||||||||||||||| |||| ||| ||||||||||| |||||||||    
T  29579923 tcaatgaaagaatcacaacaatcatttttttcttcgcataaacaattcgtttt 29579975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 11681819 - 11681704
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| |||| ||| |||| |||||||    
T  11681819 tatcaaaccacccctaatttttataatcacttaatcagtcaatttggaaagttatttcattgaaagaatcacaacaatcatttttttcttcgaataaacc 11681720  T
Q  173 attcgttttccccttt 188  Q
    || |||||| ||||||    
T  11681719 atccgttttacccttt 11681704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 11690098 - 11689983
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| |||| ||| |||| |||||||    
T  11690098 tatcaaaccacccctaatttttataatcacttaatcagtcaatttggaaagttatttcattgaaagaatcacaacaatcatttttttcttcgaataaacc 11689999  T
Q  173 attcgttttccccttt 188  Q
    || |||||| ||||||    
T  11689998 atccgttttacccttt 11689983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 29221698 - 29221583
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    |||||||||||  | ||||||||||||||||||| | ||||||||| ||  ||||||||||||| ||||||||||||| |||| ||| ||||||||||||    
T  29221698 tatcaaaccactcttaatttgtataatcacttaaacggtcaatttggaagtctatttcattgaaggaatcacaacaatcatttttttcttcgcataaacc 29221599  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  29221598 attcgttttacccttt 29221583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 16072596 - 16072700
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcatt----gaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttcc 183  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |    ||||||||||||||||| |||| ||| ||||||||||| ||| ||||| |    
T  16072596 aatttgtataatcatttaatcagtcaatttgaaaaactatttcaatgaaagaaagaatcacaacaatcatttttttcttcgcataaactatttgttttac 16072695  T
Q  184 ccttt 188  Q
    |||||    
T  16072696 ccttt 16072700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 51066449 - 51066389
Alignment:
Q  126 tatttcattgaaagaatcacaacaattatttcttttt--cgcataaaccattcgttttccc 184  Q
    |||||||||||||||||||||||||| |||| |||||  ||||||||||||| ||||||||    
T  51066449 tatttcattgaaagaatcacaacaatcattttttttttccgcataaaccatttgttttccc 51066389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 272
Target Start/End: Original strand, 14706825 - 14706856
Alignment:
Q  241 tgtggcattgccatagctcagcttatgggggc 272  Q
    ||||||||||||||||||||||||||||||||    
T  14706825 tgtggcattgccatagctcagcttatgggggc 14706856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 42740046 - 42740251
Alignment:
Q  23 tatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaa 122  Q
    |||| |||||||||||| | ||||||||||||||||||| || |||| || |||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  42740046 tatgagttttttctagactctagttctactttctggacataagtttgatgctatcaaacaaccatcaatttgtataataacttaattagtcaatttgaaa 42740145  T
Q  123 aactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacgatgct 222  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||| ||  ||    
T  42740146 aactatttcattgaaagaatcgcaacaattatttctttttcgcataaacaattcgttttcccctttcctacgacgtaggagtgacattccaaatgaaact 42740245  T
Q  223 gttagg 228  Q
    ||||||    
T  42740246 gttagg 42740251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 37873884 - 37873718
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | |||||||||||||| |||| ||||||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |    
T  37873884 ttttttctagactctagttctactttctagacataaatttgatgctatcaaaccaccatcaatttgtatagtcacttaatcagttaatttgaaaaactgt 37873785  T
Q  129 ttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacga 195  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  37873784 ttcattgaaagaatcacaacaattatttcttttctgcataaaccattcgttttcccctttcctacga 37873718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 17674475 - 17674294
Alignment:
Q  30 tttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 129  Q
    |||||||||| | |||||  ||||||| || | ||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17674475 tttttctagactctagtttcactttctagatataaatttgatgctattaaaccaccatcaatttgaataatcacttaatcagtcaatttgaaaaactatt 17674376  T
Q  130 tcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||    
T  17674375 tcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaagagtgacattc 17674294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 44836840 - 44836665
Alignment:
Q  32 tttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttc 131  Q
    |||||||||| ||||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44836840 tttctagattctagttctactttctgaacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttc 44836741  T
Q  132 attgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
    | ||||||||||||    || ||||||||||||||||||||||||||||| |||||||| |||| | |||||||||||||    
T  44836740 actgaaagaatcac----atcatttctttttcgcataaaccattcgtttttccctttcccacgacgtaggagtgacattc 44836665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 13120939 - 13120799
Alignment:
Q  78 aaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcg 177  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  13120939 aaaccaccattaatttgaataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcaccacaattatttctttttcgcataaaccattca 13120840  T
Q  178 ttttcccctttcctacgaagcaggagtgacattctaaacga 218  Q
    |||||||||||||||||| | ||||||||||||| ||||||    
T  13120839 ttttcccctttcctacgacgtaggagtgacattccaaacga 13120799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 22386960 - 22386769
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | |||||| ||| |||||||| ||||||| || |||  |||||||||||||||| | ||||||||||||||||||||||||||||||    
T  22386960 gttttttctagactctagttccactgtctggacataaatttgatgctatttaaccaccatcaatttgaacaatcacttaatcagtcaatttgaaaaacta 22386861  T
Q  128 tttcattgaaagaatcacaacaatt-atttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacga 218  Q
    ||||||||||||||||||||||||| || | ||||| |||||||||||| ||||||||||||||||||| | ||||||||||||| ||||||    
T  22386860 tttcattgaaagaatcacaacaattaatattttttttgcataaaccatttgttttcccctttcctacgacgtaggagtgacattccaaacga 22386769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 12971347 - 12971509
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||||| || |||||||| |||| || | |||||||||||||  |||||||||||||||||||||||||||||||||||| |||    
T  12971347 gttttttctagactttagttctcctatctggacataaatctgatattatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagcta 12971446  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  12971447 tttcatcgaaagaatcacaacaatcatttctttttcacataaaccattcgttttcccctttcc 12971509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 24556737 - 24556937
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| |||||||||||| | || ||| |||||||  ||| ||||||| || ||| ||||||||||||||||| ||||||||||||| ||||||||    
T  24556737 acacgtatgagttttttctagactctaattccactttctcaacataaatttggtgctattaaaccaccatcaatttgaataatcacttaataagtcaatt 24556836  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacg 217  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||  | | ||||||||||||| |||||    
T  24556837 tgaaaaactatttcatttaaagaatcacaacaattatttctttttcgcataaaccattcgtttttctttttcctatcacgtaggagtgacattccaaacg 24556936  T
Q  218 a 218  Q
    |    
T  24556937 a 24556937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 50371080 - 50371255
Alignment:
Q  33 ttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttca 132  Q
    ||||||| | ||||||| ||||||||| | ||| ||| || ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  50371080 ttctagactctagttctcctttctggatataaagttgatgctatcaaatcaccctcaatttgtataatcacttaatcagtcaatttgaaaaactgtttca 50371179  T
Q  133 ttgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgaca 208  Q
    ||||||||||||||||||| |||||||||||||||||| |||| ||||| ||||| || || | | ||||||||||    
T  50371180 ttgaaagaatcacaacaatcatttctttttcgcataaatcattagtttttcccttacccacaacggaggagtgaca 50371255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 26486498 - 26486313
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| |||||||||| | | ||||||||||||||||| | ||||||| || |||||||||| |||||||||||||||||||||||||            
T  26486498 acacgtatgagttttttctaaactctagttctactttctggaaataaatttgatgctatcaaaccatcatcaatttgtataatcacttaatc-------- 26486407  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| | || ||||||||||    
T  26486406 tgaaaagctatttcattgaaaaaatcataacaattatttctttttcgcataaactattcgttttcctctttcctacgacgtagaagtgacattc 26486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 27703652 - 27703492
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | |||||||  ||| || ||| ||||||| || ||||||||||||  |||||||||||||||||||||||||||||||| ||| |||    
T  27703652 gttttttctagactctagttctcttttttgaacataaatttgatgctatcaaaccacccccaatttgtataatcacttaatcagtcaatttggaaagcta 27703553  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccccttt 188  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||    
T  27703552 tttcatcgaaagaatcacaacaatcatttcattttcgcataaaccattcgtttttcccttt 27703492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 12884214 - 12884095
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaacca 173  Q
    ||||||||||||   |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| || |||||||||||||    
T  12884214 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttaaaaagctatttcattgaaagaatcacaacaatcattttttcttcgcataaacca 12884115  T
Q  174 ttcgttttcccctttcctac 193  Q
    |||||||| |||||| ||||    
T  12884114 ttcgttttacccttttctac 12884095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 10109662 - 10109822
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||| |||| || ||| ||||| | |  |||||||||||||  ||||||||||||||||||||||||||||||| ||| | ||    
T  10109662 ttttttctagactctagttctcctttttgtacataaattggatcctatcaaaccaccactaatttgtataatcacttaatcagtcaatttggaaagcaat 10109761  T
Q  129 ttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||| ||||||    
T  10109762 ttcattgaaagaatcacaacaatcatttttttcttcgcataaactattcgttttacccttt 10109822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 18128014 - 18127899
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||||||||     
T  18128014 tatcaaaccacccataatttgtataatcacttaatcagtcaatttgaaaagctatttcattgcaagaatcacaacaattatttttttcttcgcataaact 18127915  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  18127914 attcgttttacccttt 18127899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 48722447 - 48722332
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |||| ||| ||||||||||||    
T  48722447 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattgaaataatcacaacaatcatttttttcttcgcataaacc 48722348  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  48722347 attcgttttacccttt 48722332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 5560426 - 5560605
Alignment:
Q  30 tttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 129  Q
    ||||| |||| | |||||||  |||||||||| |||| || || || |||||||||  ||||||||||||||||||||||||||||||| ||||  ||||    
T  5560426 tttttttagactatagttctcatttctggacataaatctggtgctaccaaaccacccccaatttgtataatcacttaatcagtcaatttaaaaagttatt 5560525  T
Q  130 tcattgaaagaatcacaacaattat-ttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgaca 208  Q
    |||||||||||||||||||||| || || |||| ||||||||| |||| ||||| | ||||| || | | ||||||||||    
T  5560526 tcattgaaagaatcacaacaatcatatttttttccgcataaactattcattttctcttttcccacaacggaggagtgaca 5560605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 9 - 114
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttcccctt 187  Q
    ||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  9 aatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccctt 108  T
Q  188 tcctac 193  Q
    | ||||    
T  109 ttctac 114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 30899658 - 30899760
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt---ttcgcataaaccattcgttttcccc 185  Q
    |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| |||| |||   ||||||||||||||||||||| |||    
T  30899658 aatttgtataatcacttaattagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttttcttcgcataaaccattcgttttaccc 30899757  T
Q  186 ttt 188  Q
    |||    
T  30899758 ttt 30899760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 15441231 - 15441393
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | ||||||| |||||| |||| |||| |  || ||||||||||||  ||||||||||||||||||||||| |||||||  ||| |||    
T  15441231 gttttttctagactctagttctcctttctagacataaatataatgctatcaaaccacctacaatttgtataatcacttaatcactcaatttataaagcta 15441330  T
Q  128 tttcatt-gaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||  ||||||||||||||| || |||||||| ||||||| ||||| ||||||| |||||    
T  15441331 tttcattaaaaagaatcacaacaa-taattcttttttgcataaatcattcattttcccttttcc 15441393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 29208175 - 29208060
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   |||||||||||||| ||||||||||||| || ||  ||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  29208175 tatcaaaccacccctaatttgtataatcatttaatcagtcaatctggaagtctatttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 29208076  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  29208075 attcgttttacccttt 29208060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 33124692 - 33124601
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgtt 179  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||    
T  33124692 aatttgtataatcacttaataagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcacataaaccattcgtt 33124601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 6150663 - 6150816
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||| |||| || ||| ||||  | |  ||||||||||||   ||||| |||||||| |||||||||||||||||||| ||||    
T  6150663 ttttttctagactctagttctcctttttgtacataaatcagatcctatcaaaccacccctaatttatataatcatttaatcagtcaatttgaaaagctat 6150762  T
Q  129 ttcattgaaagaatcacaacaat-tatttctttttcgcataaaccattcgtttt 181  Q
    |||||||||||||||||||||||  |||| || ||| |||||||||||||||||    
T  6150763 ttcattgaaagaatcacaacaatcaattttttcttcacataaaccattcgtttt 6150816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 30004970 - 30004877
Alignment:
Q  88 caatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgtttt 181  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||| |||| || ||| |||||||||||||||||    
T  30004970 caatttgtataatcacttaatcaattaatttgaaaagctatttcattgaaagaatcgcaacaatcatttgttcttcccataaaccattcgtttt 30004877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 20905349 - 20905249
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttcccctt 187  Q
    |||||||||||||||||| |||||||||||| ||  ||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||| |||||    
T  20905349 aatttgtataatcacttattcagtcaatttggaagtctatttcattgaaagaatcacaacaataatttttttcttcgtataaaccattcgttttaccctt 20905250  T
Q  188 t 188  Q
    |    
T  20905249 t 20905249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 28885748 - 28885640
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   |||||||||||||||||||||| |||||||  ||| ||||||||||| ||||||||||||||| |||| ||| ||||||||||||    
T  28885748 tatcaaaccacccataatttgtataatcacttaatcaatcaattttgaaagctatttcattgtaagaatcacaacaatcatttttttcttcgcataaacc 28885649  T
Q  173 attcgtttt 181  Q
    |||||||||    
T  28885648 attcgtttt 28885640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 50552482 - 50552590
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||| |||| ||| |||| |||||||    
T  50552482 tatcaaaccacccctaatttgtataatcacttaatcggtcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgtataaacc 50552581  T
Q  173 attcgtttt 181  Q
    |||| ||||    
T  50552582 attcatttt 50552590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 25930606 - 25930705
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| |||| || || | |||||||||| ||||| ||||||    
T  25930606 aatttgtataatcacttaatcagtcaacttgaaaagctatttcattgaaaggatcacaacaatcattttttctttggataaaccatttgttttacccttt 25930705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 38263805 - 38263924
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | |||||| ||||| |||||| ||||||| || ||| ||||||| ||| ||||| || || ||||||||||||||||| ||||||||    
T  38263805 gttttttctagactctagttccactttttggacataaatttgatgctattaaaccactatcgatttgaattattacttaatcagtcaatttaaaaaacta 38263904  T
Q  128 tttcattgaaagaatcacaa 147  Q
    ||||||||| ||||||||||    
T  38263905 tttcattgatagaatcacaa 38263924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 51110178 - 51110070
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaatta-tttctttttcgcataaacc 172  Q
    ||||||||||||   ||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||| | ||| || ||||||||||||    
T  51110178 tatcaaaccacccctaatttctataatcacttaatcagtcaatttagaaagctatttcattgaaagaatcacaacaataagttttttcttcgcataaacc 51110079  T
Q  173 attcgtttt 181  Q
    ||| |||||    
T  51110078 atttgtttt 51110070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 52055554 - 52055654
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaatta-tttctttttcgcataaaccattcgttttcccctt 187  Q
    ||||| |||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| | ||| |  ||||||||||||||||||||| |||||    
T  52055554 aatttatataatcacttaatcaatcaatttggaaagctatttcattgaaagaatcacaacaatcagtttttccttcgcataaaccattcgttttaccctt 52055653  T
Q  188 t 188  Q
    |    
T  52055654 t 52055654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 14084759 - 14084663
Alignment:
Q  93 tgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaatta--tttctttttcgcataaaccattcgttttcccctt 187  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| ||| |  ||| || ||||||||||||||||||||| |||||    
T  14084759 tgtataatcacttaatcagtcaatttagaaagctatttcattgaaagaatcacaataatcaatttttttcttcgcataaaccattcgttttaccctt 14084663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 17487360 - 17487252
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||| |||||||||||||| | |||||||| |||  |||||||||||||||||||||||||| |||| ||| || |||||||||    
T  17487360 tatcaaaccacccctaatttatataatcacttaataaatcaatttggaaagttatttcattgaaagaatcacaacaatcatttttttctttgcataaacc 17487261  T
Q  173 attcgtttt 181  Q
    |||||||||    
T  17487260 attcgtttt 17487252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 9777403 - 9777516
Alignment:
Q  77 caaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttc-attgaaagaatcacaacaattatttctttttcgcataaaccatt 175  Q
    |||||||||  |||||| |||||||||| |||||||||||||||| ||||||||| ||  |||||||||||||||| ||| | ||||| |||||||||||    
T  9777403 caaaccacccccaatttatataatcactcaatcagtcaatttgaataactatttcaataaaaagaatcacaacaatcattaccttttctcataaaccatt 9777502  T
Q  176 cgttttcccctttcc 190  Q
     | ||||||||||||    
T  9777503 tg-tttcccctttcc 9777516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 3907472 - 3907545
Alignment:
Q  88 caatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttt 161  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| || ||| |||||||||    
T  3907472 caatttgtataatcatttaatcaatcaatttgaaaaattatttcattgaaagaatcataaaaataatttctttt 3907545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 6333574 - 6333483
Alignment:
Q  93 tgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccc 184  Q
    |||| |||||||||||||||||| ||| |||  ||||| ||| |||||||||||||||| |||| |||| ||||||||||||||| ||||||    
T  6333574 tgtaaaatcacttaatcagtcaaattggaaagttattttattaaaagaatcacaacaatcattttttttccgcataaaccattcgctttccc 6333483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 1269574 - 1269652
Alignment:
Q  110 agtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||||||||| |||||||||| |||||||||||||||| |||| |||| |||||| | ||||||||||| |||||||    
T  1269574 agtcaatttgaaaagctatttcattaaaagaatcacaacaatcattt-ttttccgcatata-cattcgttttctcctttcc 1269652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 31369512 - 31369432
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaat 108  Q
    |||||||||| | | || |||| ||||||||||| |||| || ||||||||||||||  ||||||||||||||||||||||    
T  31369512 gttttttctaaactctaattctcctttctggacataaatctgatgttatcaaaccactttcaatttgtataatcacttaat 31369432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 31369428 - 31369374
Alignment:
Q  127 atttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgtttt 181  Q
    |||||||| |||||||||||| ||| |||||||||| ||||||||||||| ||||    
T  31369428 atttcattaaaagaatcacaaaaatcatttcttttttgcataaaccattcatttt 31369374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 272
Target Start/End: Complemental strand, 16844081 - 16844050
Alignment:
Q  241 tgtggcattgccatagctcagcttatgggggc 272  Q
    ||||||||||||||||||||||||||||||||    
T  16844081 tgtggcattgccatagctcagcttatgggggc 16844050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 32810413 - 32810370
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttca 132  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||    
T  32810413 aatttgaataatcacttaatcaatcaatttgaaaagctatttca 32810370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 3547730 - 3547674
Alignment:
Q  75 atcaaaccaccatcaatttgt-ataatcacttaatcagtcaatttgaaaaactattt 130  Q
    ||||||||||| ||||||||| |||||||||||||  ||||||| ||||| ||||||    
T  3547730 atcaaaccaccctcaatttgttataatcacttaattggtcaattcgaaaagctattt 3547674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 52240554 - 52240498
Alignment:
Q  133 ttgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||| |||| ||| |||||||||| ||||| |||| ||||||    
T  52240554 ttgaaagaatcacaacaatcatttttttcttcgcataaatcattcattttgcccttt 52240498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 26633294 - 26633494
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| |||||||||||| | ||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||    
T  26633294 acacgtatgagttttttctagactctagttctactttctggacataaatttgatgctataaaaccaccatcaatttgtataatcacttaatcagtcaatt 26633393  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacg 217  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||| | | ||||||||||| |||||    
T  26633394 tgaaaagctatttcattgaaagaatcacaacaatcatttctttttcgcataaaccattcatttttccctttcccacgacgtatgagtgacattccaaacg 26633493  T
Q  218 a 218  Q
    |    
T  26633494 a 26633494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 36438479 - 36438291
Alignment:
Q  23 tatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaa 122  Q
    |||| |||||||||||  | ||||||||||||||||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36438479 tatgagttttttctaggctctagttctactttctggacataaatttgatgctatcaaaccactatcaatttgtataatcacttaatcagtcaatttgaaa 36438380  T
Q  123 aactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
    ||| ||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| |||||||||| | |||||||||||||    
T  36438379 aaccatttcattgaaagaatcacaacaataatttatttttcacataaaccattcgttttcccttttcctacgacgtaggagtgacattc 36438291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 7366618 - 7366818
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| |||||||||| | | |||||| |||||||||||| ||||||| || ||| ||||||||||||||||| ||||| |||||||  |||||||    
T  7366618 acacgtatgagttttttctatactctagttccactttctggacataaatttgatgatattaaaccaccatcaatttgaataattacttaatttgtcaatt 7366717  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacg 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||| |||||    
T  7366718 tgaaaaactattttattgaaagaatcacaacaattatttctttttcgcataaaccattcattttcccctttcctgcgacgtaggagtgacattccaaacg 7366817  T
Q  218 a 218  Q
    |    
T  7366818 a 7366818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 18895530 - 18895337
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| |||||||||||| |  ||||||||||  | |||| ||||||| |||||||||||||| || |||||||||||||| ||||||||||||||    
T  18895530 acacgtatgagttttttctagactcgagttctacttattagacataaatttgatgttatcaaaccactattaatttgtataatcaattaatcagtcaatt 18895431  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
    | ||||  |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| | |||||||||||||    
T  18895430 taaaaagttatttcattgaaagaatcacaacaattatttccttttcgcataaacaattcgttttccccttacctacgacgtaggagtgacattc 18895337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 9479069 - 9479208
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||| | | ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  9479069 ttttttctaaactctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaaactat 9479168  T
Q  129 ttcattgaaagaatcacaacaattatttctttttcgcata 168  Q
    ||| ||||||||||||||||||||||||||||||||||||    
T  9479169 ttcgttgaaagaatcacaacaattatttctttttcgcata 9479208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 1365950 - 1366112
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||| ||||||| ||||||||| || |||||||| ||||||| |  ||||||||||| | ||||| ||||||| ||||||||||||||||||||||  ||    
T  1365950 gtttcttctagactttagttctcctatctggacataaatttggtactatcaaaccactaccaattggtataatgacttaatcagtcaatttgaaaagtta 1366049  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  1366050 tttcatagaaagaatcacaacaatcatttctttttcacataaaccattcgttttcccctttcc 1366112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 32956717 - 32956878
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    |||||| |||| | ||||||| ||||||||||| |||| || || ||||||||||||  |||||| |||||||| |||||||||||||||  |||  |||    
T  32956717 ttttttttagactctagttctcctttctggacataaatctgatgctatcaaaccacccccaatttttataatcatttaatcagtcaatttataaagttat 32956816  T
Q  129 ttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32956817 ttcattgaaagaatcacaacaatgatttctttttcgcataaaccattcgttttcccctttcc 32956878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 40738119 - 40737941
Alignment:
Q  23 tatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaa 122  Q
    |||| |||||||||| | | |||||||||||| | |||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  40738119 tatgagttttttctaaactctagttctacttttttgacataaatttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaa 40738020  T
Q  123 aactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacatt 210  Q
    | |||||| ||||||||||||||||         ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  40738019 agctattttattgaaagaatcacaa---------ctttttcgcataaactattcgttttcccctttcctacgacgtaggagtgacatt 40737941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 30739065 - 30739224
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    |||||||||||||  | |||| ||||||||||| ||||  | || |||||||||| | ||||||| |||||||||||||||||||||||||||||  |||    
T  30739065 ttttttctagattccaattctcctttctggacataaatcggatgctatcaaaccatcttcaatttttataatcacttaatcagtcaatttgaaaagttat 30739164  T
Q  129 ttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccccttt 188  Q
    |||||| ||||||||||||| || ||||| ||||||||||||| ||| ||||||||||||    
T  30739165 ttcattaaaagaatcacaacgatcatttccttttcgcataaacaattagttttccccttt 30739224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 26282665 - 26282532
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||||| || |||| ||| |||| || |  ||||||||||||  |||||||||||||||||||||||||||||||||||| |||    
T  26282665 gttttttctagactttagttctcctatctgcacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagcta 26282566  T
Q  128 tttcattgaaagaatcacaacaattatttctttt 161  Q
    |||||||||||||||||||||||| |||| ||||    
T  26282565 tttcattgaaagaatcacaacaatcatttttttt 26282532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 33910006 - 33910166
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||| |||| || ||| |||| || |  ||||||| ||||   ||||||||||||| ||||||||||||||||||||| ||||    
T  33910006 ttttttctagactctagttctcctttttgtacataaatctgatcctatcaaatcacccctaatttgtataatcgcttaatcagtcaatttgaaaagctat 33910105  T
Q  129 ttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||    
T  33910106 ttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttt 33910166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 40001817 - 40001696
Alignment:
Q  30 tttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 129  Q
    |||||||||| ||||||||| || |||| ||| |||| || |  ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||    
T  40001817 tttttctagactttagttcttctatctgaacataaatctggtactatcaaaccacctccaatttgtataatcacttaatcagtcaatttgaaaagctatt 40001718  T
Q  130 tcattgaaagaatcacaacaat 151  Q
    ||||||||||||||||||||||    
T  40001717 tcattgaaagaatcacaacaat 40001696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 42311951 - 42312112
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | || ||||  |||||||||| |||| || ||||| ||||| ||| || |||||||||||||||| || |||||||||||||| |||    
T  42311951 gttttttctagactctaattctcttttctggacataaatctgatgtta-caaactaccctcgatttgtataatcacttgattagtcaatttgaaaagcta 42312049  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    ||||||| |||||||||||||| | |||| |||||||| ||||  ||||||||||||||||||    
T  42312050 tttcattaaaagaatcacaacagtcatttatttttcgcttaaataattcgttttcccctttcc 42312112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 36796449 - 36796333
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaac 171  Q
    |||||||| ||| | |||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||  |||||||||||    
T  36796449 tatcaaactacccttaatttgtataataacttaatcagtcaatttggaaaattatttcattgaaagaatcacaacaatcattttttttcttcgcataaac 36796350  T
Q  172 cattcgttttccccttt 188  Q
    |||||||||| ||||||    
T  36796349 cattcgttttacccttt 36796333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 12251365 - 12251250
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  12251365 tatcaaaccacccctaatttctataatcatttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 12251266  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  12251265 attcgttttacccttt 12251250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 18015659 - 18015542
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt---ttcgcataaa 170  Q
    ||||||||||||   |||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |||   ||||||| ||    
T  18015659 tatcaaaccacccctaatttgtataatcacttaatcaatcaatttggaaagctatttcattgaaagaatcacaacaattatttttttttcttcgcattaa 18015560  T
Q  171 ccattcgttttccccttt 188  Q
    ||||||||||| ||||||    
T  18015559 ccattcgttttacccttt 18015542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 41908167 - 41908262
Alignment:
Q  76 tcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaac 171  Q
    ||||||||||  ||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||    
T  41908167 tcaaaccacctccaatttgtacaatcacttaatcagtcaattagaaaagctgtttcattgaaagaatcacaacaatcatttctttttcgcataaac 41908262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 28590263 - 28590087
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    ||||||||||||||| |||| | ||||||||||||||||  | || || |||||||||  |||||| |||||| ||||||| ||| | |||    |||||    
T  28590263 gttttttctagattt-agttatcctttctggacaaaaatacgatgctaccaaaccacccccaatttatataattacttaattagttacttt--ttaacta 28590167  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgaca 208  Q
    ||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||| || | | ||||||||||    
T  28590166 tttcattaaaagaatcacaacaattatttctttttcgcgt-aaccattcgttttcccctttcccacaacggaggagtgaca 28590087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 46221765 - 46221672
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgtttt 181  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  46221765 aatttgtagaatcacttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttattcgcataaaccattcgtttt 46221672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 4099955 - 4100063
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   |||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||| ||| |||||| |||||    
T  4099955 tatcaaaccacccctaatttgtataatcacttaatcaatcaatttgaaaagctatttcattgaaagaattacaacaatcatttttttcttcgcaaaaacc 4100054  T
Q  173 attcgtttt 181  Q
    |||||||||    
T  4100055 attcgtttt 4100063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 6380206 - 6380046
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||| |||| || |||  ||| || |  ||||||||||||   |||||||||||||||||||||| |||||||| ||  ||||    
T  6380206 ttttttctagactctagttcttctttttgtacatgaatctgatcctatcaaaccacccctaatttgtataatcacttaatcaatcaatttggaagtctat 6380107  T
Q  129 ttcattgaaagaatcacaacaattat-ttctttttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||| || || || ||||||||||||||||||||| ||||||    
T  6380106 ttcattgaaagaatcacaacaatcatatttttcttcgcataaaccattcgttttacccttt 6380046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 7636403 - 7636287
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaac 171  Q
    ||||||||||||   |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||  ||| ||||| |    
T  7636403 tatcaaaccacccctaatttgtataattacttaatcagtcaatttgaaaagctatttcattgaaagaatcgcaacaatcattttttttcttcccataagc 7636304  T
Q  172 cattcgttttccccttt 188  Q
    |||||||||| ||||||    
T  7636303 cattcgttttacccttt 7636287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 44894091 - 44893991
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttcccctt 187  Q
    |||||||||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||| |||| ||| ||| ||||||||||||||||| |||||    
T  44894091 aatttgtataatcacttaatcaatcaatttggaaagctattttattgaaagaatcacaacaatcatttttttcttcacataaaccattcgttttaccctt 44893992  T
Q  188 t 188  Q
    |    
T  44893991 t 44893991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 773983 - 773849
Alignment:
Q  52 tttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaat 151  Q
    |||||||| | |||| || || ||||||| ||||   |||||||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||||||    
T  773983 tttctggaaataaatctgatgctatcaaatcacccctaatttgtataattactttatcagtcaatttgaaaagctattttattgaaagaatcacaacaat 773884  T
Q  152 tatttcttttt--cgcataaaccattcgttttccc 184  Q
     |||| |||||   |||||||||||||||||||||    
T  773883 cattttttttttgtgcataaaccattcgttttccc 773849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 40841369 - 40841203
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatc-aatttgtataatcacttaatcagtcaatttgaaaaact 126  Q
    |||||||||||| | || || | |||| |||||| |||| || |||||||||||||||  | |||||||||||| ||||||  | |||||||  |||  |    
T  40841369 gttttttctagactctaattattctttttggacataaatatgatgttatcaaaccacctcctaatttgtataattacttaactaatcaatttataaagtt 40841270  T
Q  127 atttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctac 193  Q
    |||  ||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||    
T  40841269 attctattaaaagaattacaacactcatttctttttcgcataaaccattcgttttcccctttcctac 40841203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 11672588 - 11672681
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgtttt 181  Q
    ||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||||| |||| ||| |||||||||| ||||||||||    
T  11672588 aatttgtataatcacttaatcagtcaatttggaaagttatttcaatgaaagaatcacaacaatcatttttttcttcgcataaatcattcgtttt 11672681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 3799884 - 3799731
Alignment:
Q  25 tgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaa 124  Q
    ||||||| || |||||||||||||| |||||||||  ||| |||| || | ||||||||||  ||| ||||||||||| ||||| || ||||||   ||     
T  3799884 tgggtttcttttagattttagttctcctttctggattaaa-tttgatgct-tcaaaccacctccaaattgtataatcatttaataagccaattttggaag 3799787  T
Q  125 ctatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgtttt 181  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  3799786 ctatttcattgaaagaatcacaacaatcattt-ttttccgcataaaccattcgtttt 3799731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 42161197 - 42161091
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaacca 173  Q
    ||||||||||||   ||||||||||||||||| |||||| |||||| ||| |||||||||||||||||||||| |||  |||| || |||||||||||||    
T  42161197 tatcaaaccacccctaatttgtataatcacttgatcagttaatttggaaagctatttcattgaaagaatcacagcaacaattt-ttcttcgcataaacca 42161099  T
Q  174 ttcgtttt 181  Q
    ||||||||    
T  42161098 ttcgtttt 42161091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 33419180 - 33419086
Alignment:
Q  89 aatttgtataatcacttaatca-gtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgtttt 181  Q
    |||||||||||||||||||| | |||||||||||||  |||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||    
T  33419180 aatttgtataatcacttaattaagtcaatttgaaaagttatttcattgaaagaatcacaataatcatttttttcttcgcataaaccattcgtttt 33419086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 41852424 - 41852263
Alignment:
Q  25 tgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaa 124  Q
    ||||||||||||||| ||||||||| ||||| |||   |||| || || ||| |||||||  || | || |||||||||||| ||||||||||| || |     
T  41852424 tgggttttttctagactttagttctcctttcaggatgtaaatatggtgctataaaaccac--tccaattttataatcacttactcagtcaatttaaagag 41852327  T
Q  125 ctatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccccttt 188  Q
     |||||||||||||||||| ||||| | |||||||||| |||||||  |||| |||||||||||    
T  41852326 ttatttcattgaaagaatcgcaacactcatttcttttttgcataaataattcattttccccttt 41852263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 44876218 - 44876123
Alignment:
Q  88 caatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccc 184  Q
    |||||| || ||||| |||||||||||||||  ||| |||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  44876218 caatttttaaaatcatttaatcagtcaatttagaaagctatttcattaaaagaatcacaacaatcattt-ttttccgcataaaccattcgttttccc 44876123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 25610091 - 25610169
Alignment:
Q  112 tcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    ||||||||||||   ||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||    
T  25610091 tcaatttgaaaagtcatttcattgaaagaatcacaacaatcatttctttttcacataaaccaatagttttcccctttcc 25610169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 8358416 - 8358294
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    |||| |||||| ||||||||| |||| || ||| ||||  | |  ||||||||||||   ||||| |||||||||||||||||||||||| ||||  |||    
T  8358416 ttttctctagactttagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttatataatcacttaatcagtcaatttaaaaagttat 8358317  T
Q  129 ttcattgaaagaatcacaacaat 151  Q
     ||||||||||||||||||||||    
T  8358316 ctcattgaaagaatcacaacaat 8358294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 25061846 - 25061957
Alignment:
Q  30 tttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 129  Q
    ||||| |||| | ||||||| |||| |||||| |||| || || |||||||| |   |||||||||| |||||||| |||||| |||||||||| |||||    
T  25061846 tttttttagactctagttcttctttttggacataaatctgatgctatcaaactattctcaatttgtacaatcactttatcagttaatttgaaaagctatt 25061945  T
Q  130 tcattgaaagaa 141  Q
    ||||||||||||    
T  25061946 tcattgaaagaa 25061957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 25610022 - 25610098
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttg 94  Q
    |||||| ||||||||||||||| ||||||||| || |||| ||| |||| || |  |||||||||| | ||||||||    
T  25610022 acacatttgggttttttctagactttagttctcctatctgaacataaatctggtactatcaaaccaacctcaatttg 25610098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 9e-67; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 3628880 - 3628680
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| |||||||||||| | ||||||||| |||||| || ||||||| || |||||||||||||| ||||||||||||||| |||||||||||||    
T  3628880 acacgtatgagttttttctagactctagttctacattctggtcataaatttgatgctatcaaaccaccattaatttgtataatcacataatcagtcaatt 3628781  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacg 217  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | ||||||||||||| |||||    
T  3628780 tgaaaagttatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgtttttccgtttcctacgacgtaggagtgacattccaaacg 3628681  T
Q  218 a 218  Q
    |    
T  3628680 a 3628680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 34524074 - 34523912
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||||| || |||||||| |||| || |  ||||||||||||  |||||||||||||||||||||||||||||||||||| |||    
T  34524074 gttttttctagactttagttctcctatctggacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagcta 34523975  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  34523974 tttcattgaaagaatcacaacaatcatttctttttcatataaaccattcgttttcccctttcc 34523912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 32098301 - 32098139
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | ||||| | |||| |||||| ||||||| || |||||||||||  | ||||||||| ||||||||||||||||||||| |||||||    
T  32098301 gttttttctagactctagttatcctttttggacataaatttgatgctatcaaaccactcttaatttgtatgatcacttaatcagtcaatttggaaaacta 32098202  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  32098201 tttcattgaaagaatcacaacaattatttcttttttgcataaaccattcgttttccccattcc 32098139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 39698061 - 39697899
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||||| || ||| | || ||||||| |  ||||||||||||| |||||||||| |||| ||||| |||||||||||||| |||    
T  39698061 gttttttctagactttagttctcctatcttggcataaatttggtactatcaaaccaccaccaatttgtatgatcatttaattagtcaatttgaaaagcta 39697962  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  39697961 tttcattgaaagaatcacaacaattatttcttttttacataaaccattcgttttcgcctttcc 39697899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 23567395 - 23567235
Alignment:
Q  30 tttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 129  Q
    |||||||||| |||||||||  | |||| ||| |||| || |  ||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  23567395 tttttctagactttagttctcttatctgaacataaatctgctactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaatactatt 23567296  T
Q  130 tcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||||||||||| || |||||    
T  23567295 tcattgaaagtatcacaacaatgatttctttttcacataaaccattcgtttttccttttcc 23567235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 12531500 - 12531662
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||||| || || | ||| |||| |  |  |||||||| |||  ||||||||||||||||||||||||||||||| |||| |||    
T  12531500 gttttttctagactttagttctcctatccgaacataaatcttgtactatcaaactacctccaatttgtataatcacttaatcagtcaatttaaaaatcta 12531599  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  12531600 tttcattgaaagaatcacaacaatcatttctttttcacataaaccatttgttttcccctttcc 12531662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 35874855 - 35875000
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccat--caatttgtataatcacttaatcagtcaa 115  Q
    |||| |||| |||||||||||| | ||||||||||||||||| | ||||||| || ||||||||||| ||  |||||||||||||||||||||| |||||    
T  35874855 acacgtatgagttttttctagactctagttctactttctggatataaatttgatgctatcaaaccactatatcaatttgtataatcacttaatcggtcaa 35874954  T
Q  116 tttgaaaaactatttcattgaaagaatcacaacaattatttctttt 161  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||    
T  35874955 tttgaaaaactatttcttagaaagaaccacaacaattatttctttt 35875000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 5869443 - 5869289
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    ||||||| |||| ||||||||| ||||||| ||| ||||| | |  ||||||||||||| |||||| || |||||||||||||||||||||||||| |||    
T  5869443 gttttttttagactttagttctcctttctgtacataaatt-gatactatcaaaccacca-caatttttaaaatcacttaatcagtcaatttgaaaagcta 5869346  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccc 184  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||||| ||||||||    
T  5869345 tttcattgaaagaatcacaacaatcattttttttccgcataaaccatttgttttccc 5869289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 18420686 - 18420578
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||| ||||||||||||    
T  18420686 tatcaaaccacacttaatttgtataatcacttaatcagtcaatttgaaaagctgtttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 18420587  T
Q  173 attcgtttt 181  Q
    |||||||||    
T  18420586 attcgtttt 18420578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 43926445 - 43926285
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | |||||||||||| || | | ||||  | |  ||||||||||||   |||||||||||| |||||||||||||||||||||| ||||    
T  43926445 ttttttctagactctagttctactttttgtatataaatcggatcctatcaaaccacccataatttgtataattacttaatcagtcaatttgaaaagctat 43926346  T
Q  129 ttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||| ||||||    
T  43926345 ttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgctttacccttt 43926285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 3471587 - 3471702
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||| ||||    
T  3471587 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcatgaacc 3471686  T
Q  173 attcgttttccccttt 188  Q
    |||| |||| ||||||    
T  3471687 attcattttacccttt 3471702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 13585286 - 13585401
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  13585286 tatcaaaccacccctaatttgtataatcaattaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 13585385  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  13585386 attcgttttacccttt 13585401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 18112118 - 18112219
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccattcgttttcccct 186  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||  ||||||||||||||||||||| ||||    
T  18112118 aatttgtataatcacttaatcagtcaatttggaaaactattttattgaaagaatcacaacaatcattttttttcttcgcataaaccattcgttttaccct 18112217  T
Q  187 tt 188  Q
    ||    
T  18112218 tt 18112219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 36515202 - 36515088
Alignment:
Q  105 taatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttcccctttcctacgaagcaggag 203  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||| |||||||||| | |||||    
T  36515202 taatcagttaatttaaaaaactatttcattgaaagaatcacaacaattatttttttcttcgcataaatcatttgttttcccatttcctacgacgtaggag 36515103  T
Q  204 tgacattctaaacga 218  Q
    |||||||| ||||||    
T  36515102 tgacattccaaacga 36515088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 29372344 - 29372488
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaacca 173  Q
    |||||||| |||  ||||||||||||||| |||||||||||||||| |||  ||||  ||||||||||| |||||||| |||| ||||||||||||||||    
T  29372344 tatcaaactacccacaatttgtataatcatttaatcagtcaatttggaaagttattcaattgaaagaatgacaacaatcatttatttttcgcataaacca 29372443  T
Q  174 ttcgttttcccctttcctacgaagcaggagtgacattctaaacga 218  Q
    ||| ||||||||||| | |||| | |||||||||| || ||||||    
T  29372444 ttcattttcccctttgccacgatgaaggagtgacaatccaaacga 29372488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 1004060 - 1004162
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttg-aaaaactatttcattgaaagaatcacaacaattatttctttt--tcgcataaaccattcgttttcccc 185  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||  |||||||||||||||||||| |||    
T  1004060 aatttgtataatcacttaatcagtcaatttgaaaaaattatttcattgaaagaatcacaacaatcattttttttcatcgcataaaccattcgttttaccc 1004159  T
Q  186 ttt 188  Q
    |||    
T  1004160 ttt 1004162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 211
Target Start/End: Original strand, 42076066 - 42076233
Alignment:
Q  46 ttctactttctggacaaaaatttgtt-gttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatca 144  Q
    |||||||||||| ||| |||||| || | |||||||| | |||||||||||||||| ||||||||| |||||||||||| ||||  ||||||||||||||    
T  42076066 ttctactttctgaacataaatttttttgctatcaaactatcatcaatttgtataataacttaatcaatcaatttgaaaagctataacattgaaagaatca 42076165  T
Q  145 caacaattat--ttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
     || ||| ||  || |||| ||||||||| |||||||||||||||| ||||| || |||||||||||||    
T  42076166 taataataattatttttttccgcataaactattcgttttccccttttctacg-agtaggagtgacattc 42076233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 43968132 - 43968039
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgtttt 181  Q
    |||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  43968132 aatttgtataatcacttaatcaatcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgtttt 43968039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 44665123 - 44665008
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||| ||||||||||||||| ||||| |||  |||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  44665123 tatcaaaccacctctaatttgtatcatcacttaatcagtctatttggaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 44665024  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  44665023 attcgttttacccttt 44665008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 30915410 - 30915268
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    |||||| |||| | || |||| ||||||||||| | || || || || |||||| ||  |||| ||||||||||||||||||||||||||||||| ||||    
T  30915410 ttttttttagactctaattctcctttctggacatagatctgatgctaccaaacctcctccaatatgtataatcacttaatcagtcaatttgaaaagctat 30915311  T
Q  129 ttcatt-gaaagaatcacaacaattatttctttttcgcataaa 170  Q
    ||||||  |||||||||||||||| ||||||||||||||||||    
T  30915310 ttcattaaaaagaatcacaacaatcatttctttttcgcataaa 30915268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 7858087 - 7858187
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttcccctt 187  Q
    ||||||||||||||||||||||||||||||| |||  || |||||| |||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  7858087 aatttgtataatcacttaatcagtcaatttggaaagttaattcatttaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccctt 7858186  T
Q  188 t 188  Q
    |    
T  7858187 t 7858187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 27074561 - 27074669
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   |||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||| |||| ||| ||||||||||||    
T  27074561 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttaaaagtctatttcattgaaaaaatcacaacaatcatttttttcttcgcataaacc 27074660  T
Q  173 attcgtttt 181  Q
    ||| |||||    
T  27074661 atttgtttt 27074669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 42951831 - 42951727
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaat----cacaacaattatttcttt-ttcgcataaaccattcgttttcc 183  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||||||||    ||||||||| |||| ||| ||||||||||||||||||||| |    
T  42951831 aatttgtataatcacttaatcagtcaatttgaaaagttattttattgaaagaatcacacacaacaatcatttttttcttcgcataaaccattcgttttac 42951732  T
Q  184 ccttt 188  Q
    |||||    
T  42951731 ccttt 42951727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 33452778 - 33452894
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaa-gaatcacaacaattatttctttttcgcataaacc 172  Q
    ||||||||||||  |||||| |||||||||| ||| | ||||||||||||  ||||| | | ||| ||||||||||||| |||||||||||||||||| |    
T  33452778 tatcaaaccacctccaatttatataatcactcaattaatcaatttgaaaagttattttaataaaaagaatcacaacaatcatttctttttcgcataaatc 33452877  T
Q  173 attcgttttcccctttcc 190  Q
    ||| | ||||||||||||    
T  33452878 atttg-tttcccctttcc 33452894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 42777763 - 42777866
Alignment:
Q  105 taatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagt 204  Q
    |||| |||||||||  ||| |||||| ||| |||||||||||||||| |||| |||| |||||| ||||||||||||| | ||||| || | | ||||||    
T  42777763 taattagtcaatttagaaagctatttaattaaaagaatcacaacaatcattttttttccgcatataccattcgttttctcatttcccacaacggaggagt 42777862  T
Q  205 gaca 208  Q
    ||||    
T  42777863 gaca 42777866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 2545977 - 2545887
Alignment:
Q  95 tataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||||||||||| |||| |||  ||  |||||||||||||  |||| |||||||     ||||||| |||||||||||||||||||||||||    
T  2545977 tataatcacttaatcaatcaaattgggaagttatttcattgaaactatcaaaacaatt-----tttttcgtataaaccattcgttttcccctttcc 2545887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 272
Target Start/End: Original strand, 24439927 - 24439958
Alignment:
Q  241 tgtggcattgccatagctcagcttatgggggc 272  Q
    ||||||||||||||||||||||||||||||||    
T  24439927 tgtggcattgccatagctcagcttatgggggc 24439958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 3575175 - 3575117
Alignment:
Q  116 tttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccat 174  Q
    |||||||| |||||||||||||||||||||   ||| ||||| |||| |||||||||||    
T  3575175 tttgaaaagctatttcattgaaagaatcacctaaatcatttcatttttgcataaaccat 3575117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 5971819 - 5971742
Alignment:
Q  88 caatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataa 169  Q
    |||||| ||| |||||||||||||||||||| |||| ||||    || |||||||||||||||| | |||| ||| ||||||    
T  5971819 caatttctatcatcacttaatcagtcaatttaaaaagctat----tttaaagaatcacaacaatcagttctcttttgcataa 5971742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 138073 - 138267
Alignment:
Q  16 ggacacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaa 115  Q
    |||||| |||| |||||||||||| | ||||||||||||  ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  138073 ggacacgtatgagttttttctagactctagttctacttttcggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaa 138172  T
Q  116 tttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
    |||||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| || ||||||||||    
T  138173 tttgaaaagctatttcattgaaataatcacaacaattattttttttccgcataaaccattcgttttccccttt-ctacgaagtagtagtgacattc 138267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 17325780 - 17325976
Alignment:
Q  23 tatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaa 122  Q
    |||| ||||||| |||| | |||||| |||||||||||| ||||||| || ||| |||| |||||| ||||| |||||||||||||||||||||||||||    
T  17325780 tatgagttttttttagactctagttccactttctggacataaatttgatgctattaaactaccatcgatttgaataatcacttaatcagtcaatttgaaa 17325879  T
Q  123 a-actatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacga 218  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||    
T  17325880 aaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgctttcccctttcctacgacgtaggagtgacattccaaacga 17325976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 10033476 - 10033677
Alignment:
Q  16 ggacacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatca-gtca 114  Q
    ||||||||||| |||||| ||||| | ||||||||||||||| ||| ||||||| || ||||||||| ||||||||||||||||||||| | | | ||||    
T  10033476 ggacacatatgagttttt-ctagactctagttctactttctgtacataaatttgatgctatcaaacccccatcaatttgtataatcactgattaaagtca 10033574  T
Q  115 atttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaa 214  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| ||    
T  10033575 atttgaaaagctattttattgaaagaatcacaataattatttctttttcgcataaaccattcgtttt-ccctttcctacgacgtaggagtgacattccaa 10033673  T
Q  215 acga 218  Q
    ||||    
T  10033674 acga 10033677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 42292003 - 42291842
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||| | ||||||||| || |||||||| ||||||| |  ||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  42292003 ttttttctaaactttagttctcctatctggacataaatttggtactatcaaatcaccaccaatttgtataatcacttaatcagtcaatttgaaaatctat 42291904  T
Q  129 ttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  42291903 ttcattgaaagaatcacaacaatcatttctttttcacataaaccattcgttttcccctttcc 42291842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 18873409 - 18873591
Alignment:
Q  43 tagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatt----tgtataatcacttaatcagtcaatttgaaaaactatttcattgaaa 138  Q
    ||||| ||||||||| ||| ||||||| || |||||||||||||||||||    ||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  18873409 tagttttactttctgaacataaatttgatgctatcaaaccaccatcaattaatttgtataaccacttaatcagccaatttgaaaagctatttcattgaaa 18873508  T
Q  139 gaatcacaacaattatttctttttcgcataaacc---attcgttttcccctttcctacgaagcaggagtgacattctaaacga 218  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||| | ||||||||||||| ||||||    
T  18873509 gaatcacaacaattatttctttttcgcataaaccattattcgttttcccctttcctacgacgtaggagtgacattccaaacga 18873591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 4734705 - 4734543
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||||| || |||||||| |||| || |  ||||||||||||| |||||||||||||| ||| |||| |||||||||||| |||    
T  4734705 gttttttctagactttagttctcctatctggacataaatctggtactatcaaaccaccaccaatttgtataatcccttgatcactcaatttgaaaatcta 4734606  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||    
T  4734605 tttcattgaaagaatcacaacaatcatttctttttcacataaaccattcgttttcccatttcc 4734543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 43511559 - 43511721
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||||| || |||||||| |||| || |  ||||||||||||  |||||||||||||||||||||||||||||||||||| |||    
T  43511559 gttttttctagactttagttctcctatctggacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagcta 43511658  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||| ||||||||||||||||| |||||||||||  |||||||||||||||| ||||||||    
T  43511659 tttcatggaaagaatcacaacaatcatttctttttcatataaaccattcgtttttccctttcc 43511721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 20975927 - 20976080
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| |||||||||  | ||| |||| ||||||| |  ||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  20975927 ttttttctagactttagttctcttatcttgacataaatttggtactatcaaaccaccaccaatttgtataatcatttaatcagtcaatttgaaaagctat 20976026  T
Q  129 ttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttc 182  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  20976027 ttcattgaaagaatcacaacaatcatttctttttcacataaactattcgttttc 20976080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 17514057 - 17513897
Alignment:
Q  30 tttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 129  Q
    |||||||||| ||||||||| || |||||| | |||| || |  || |||||||||  ||||||||||||||||||||||||||||||||||||  ||||    
T  17514057 tttttctagactttagttctcctatctggatataaatctggtactaacaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagttatt 17513958  T
Q  130 tcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    ||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  17513957 tcactgaaagaatcacaacaatcatttctttttcacataaaccattcgtttttccctttcc 17513897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 3349851 - 3349690
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||||| || |||||||| ||||||| |   |||||||||| | ||||| | ||||| |||||||||||||||||||||| |||    
T  3349851 gttttttctagactttagttctcctatctggacataaatttggtac-atcaaaccactaccaattggaataatgacttaatcagtcaatttgaaaagcta 3349753  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  3349752 tttcatagaaagaatcacaacaatcatttctttttcacataaaccgttcgttttcccctttcc 3349690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 5829326 - 5829489
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    ||||||| |||| ||||||||| || ||| |||| |||| || |  |||||||||| | ||||||||||||||||||||||||||||||||  ||| |||    
T  5829326 gttttttatagactttagttctcctatcttgacataaatctggtactatcaaaccaacctcaatttgtataatcacttaatcagtcaattt--aaagcta 5829423  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctac 193  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  5829424 tttcattaaaagaatcacaacaatcatttctttttcacataaaccattcgtttttccctttcctac 5829489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 10591396 - 10591234
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||||| || |||| ||| |||| || |  ||||||||||||  ||||||||||||||||||||||||| ||||||||||  ||    
T  10591396 gttttttctagactttagttctcctatctgaacataaatatggtactatcaaaccacccccaatttgtataatcacttaatcagttaatttgaaaagtta 10591297  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||||||||||||||||||| |||| |||||| || ||| |||||||| ||||||||||    
T  10591296 tttcattgaaagaatcacaacaatcatttatttttcacaaaaatcattcgttatcccctttcc 10591234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 29156131 - 29156293
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | ||||| | || |||| ||| |||| || |  ||||||||||||   |||||||||||||||||||||||||||||| ||||  ||    
T  29156131 gttttttctagactatagttatcctatctgaacataaatctggtactatcaaaccacccctaatttgtataatcacttaatcagtcaatttaaaaagtta 29156230  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  29156231 tttcattgaaagaatcacaacaatcatttctttttcatataaaccattcgttttcccctttcc 29156293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 40956254 - 40956416
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | ||||||| |||| |||||| |||| || ||  |||||||   |  ||||||||||||||||||||||| | ||||||||||||||    
T  40956254 gttttttctagactctagttctcctttgtggacataaatctgatgcaatcaaacattctccaatttgtataatcacttaatcatttaatttgaaaaacta 40956353  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    ||||||| |||||||||||||||| |||||||||| ||||| |||||||||||||||||||||    
T  40956354 tttcattaaaagaatcacaacaatcatttcttttttgcatacaccattcgttttcccctttcc 40956416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 7390460 - 7390360
Alignment:
Q  91 tttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||||||||||||||||||||||| ||||  |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7390460 tttgtataatcacttaatcagtcaatttaaaaagttatttcatcgaaagaatcacgacaattatttctttttcgcataaaccattcgttttcccctttcc 7390361  T
Q  191 t 191  Q
    |    
T  7390360 t 7390360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 16515478 - 16515599
Alignment:
Q  41 tttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaaga 140  Q
    |||||||||||||||| |||| ||||||| || ||| ||| ||||||||||||  ||||||||||||||| ||||||||||||| ||||| |||||||||    
T  16515478 tttagttctactttctagacataaatttgatgctattaaaacaccatcaattttaataatcacttaatcaatcaatttgaaaaattattttattgaaaga 16515577  T
Q  141 atcacaacaattatttcttttt 162  Q
    ||||||||||||||||||||||    
T  16515578 atcacaacaattatttcttttt 16515599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 13656212 - 13656317
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttcccctt 187  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  13656212 aatttgtataatcacttaatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccctt 13656311  T
Q  188 tcctac 193  Q
    | ||||    
T  13656312 ttctac 13656317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 40779133 - 40779288
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | ||||||| ||||||| ||| ||||||| ||||||||||| | |  ||||||||||||||  ||||| ||||||||||||||||||    
T  40779133 gttttttctagagtctagttctcctttctgaacataaatttgatgttatcaaactatccccaatttgtataatcgtttaataagtcaatttgaaaaacta 40779232  T
Q  128 tttcattgaaagaatcacaacaattatttc-tttttcgcataaaccattcgttttcc 183  Q
    || ||||| | ||||||||||||| ||||| ||||||| ||||||||||||||||||    
T  40779233 ttccattg-aggaatcacaacaatcatttcttttttcgtataaaccattcgttttcc 40779288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 13474617 - 13474732
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||| |||| ||| ||||||||||||    
T  13474617 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagttgtttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 13474716  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  13474717 attcgttttacccttt 13474732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 27351292 - 27351470
Alignment:
Q  30 tttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 129  Q
    |||||||||| | ||||||| ||||||| ||| ||||||| || ||||||||||||  |||||||||||| ||||||||||||||||||| |||  ||||    
T  27351292 tttttctagactctagttctcctttctgaacataaatttggtgctatcaaaccacctccaatttgtataaccacttaatcagtcaatttggaaagttatt 27351391  T
Q  130 tcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgaca 208  Q
    ||||||||||||| ||   ||| |||||||||| |||||||||| || |||||  |||||| || | | ||||||||||    
T  27351392 tcattgaaagaataacctaaatcatttcttttttgcataaaccagtcattttcttctttcccacaacggaggagtgaca 27351470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 19099376 - 19099283
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgtttt 181  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  19099376 aatttgtataatcacttaatcagtcaatttaaaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgtttt 19099283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 12661296 - 12661411
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaat-tatttctttttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| | ||| || ||||||||||||    
T  12661296 tatcaaaccacctctaatttgtataatcacttaaccagtcaatttggaaagctatttcattgaaagaatcacaacaatattttttttcttcgcataaacc 12661395  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  12661396 attcgttttacccttt 12661411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 13423866 - 13423966
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttcccctt 187  Q
    |||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  13423866 aatttgtataatcacttaatcaatcaatttagaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccctt 13423965  T
Q  188 t 188  Q
    |    
T  13423966 t 13423966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 26377896 - 26377742
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||| |||| || ||| ||||  | |  ||||||||||||   |||||||||||||||||| ||||||||| ||| || ||||    
T  26377896 ttttttctagactctagttctcctttttgtacataaatcagatcctatcaaaccacccctaatttgtataatcacttattcagtcaatgtgagaagctat 26377797  T
Q  129 ttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccattcgtttt 181  Q
    ||||||||||||||||||||||| |||| |||  |||||||||||||||||||||    
T  26377796 ttcattgaaagaatcacaacaatcatttttttccttcgcataaaccattcgtttt 26377742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 931381 - 931478
Alignment:
Q  88 caatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctt 187  Q
    |||||||||||||||||||||||||||||||  ||| |||||     ||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  931381 caatttgtataatcacttaatcagtcaatttagaaagctatt-----gaaagaatcacaataatcatttctttttcgcataaaccattcgttttctcctt 931475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 33281677 - 33281762
Alignment:
Q  90 atttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatt 175  Q
    ||||||||||||||||||| ||||||||| ||||  |||||||||||||||||| ||| ||| |||||||||||||||||||||||    
T  33281677 atttgtataatcacttaattagtcaatttaaaaagttatttcattgaaagaatcccaataatcatttctttttcgcataaaccatt 33281762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 36718644 - 36718535
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaac 171  Q
    ||||||||||||   |||||||||||||| |||||||||||||||| |||  ||||| ||||||||||||||||| || |||| |||  |||||||||||    
T  36718644 tatcaaaccacccctaatttgtataatcatttaatcagtcaatttgtaaagttattttattgaaagaatcacaaccataattttttttcttcgcataaac 36718545  T
Q  172 cattcgtttt 181  Q
    ||||||||||    
T  36718544 cattcgtttt 36718535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 8379453 - 8379406
Alignment:
Q  140 aatcacaacaattatttctttttcgcataaaccattcgttttcccctt 187  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  8379453 aatcacaacaataatttctttttcgcataatccattcgttttcccctt 8379406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 23069179 - 23069277
Alignment:
Q  46 ttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatca 144  Q
    |||| ||||||| ||| |||| || || || |||||||||  |||||||||||||| |||||||| || ||||| ||| ||||||||||  ||||||||    
T  23069179 ttctcctttctgaacataaatatgatgctagcaaaccacccccaatttgtataatcccttaatcattcgatttggaaagctatttcattacaagaatca 23069277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 26312027 - 26312079
Alignment:
Q  130 tcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgtttt 181  Q
    |||||||||||||||||||||| |||| ||| |||| ||||||||||||||||    
T  26312027 tcattgaaagaatcacaacaatcatttttttcttcgtataaaccattcgtttt 26312079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 37029095 - 37029051
Alignment:
Q  88 caatttgtataatcacttaatcagtcaatttgaaaaactatttca 132  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||    
T  37029095 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 37029051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 34138433 - 34138387
Alignment:
Q  240 atgtggcattgccatagctcagcttatgg-gggcaccatagtggaga 285  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||    
T  34138433 atgtggcactgccatagctcagcttatggaggccaccatagtggaga 34138387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 26311948 - 26312029
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatca 110  Q
    ||||||||||||| ||||||| |||| || ||| ||||  | |  ||||||||||||   ||||||||||||||||||||||    
T  26311948 ttttttctagattctagttcttctttttgtacataaatcggatcctatcaaaccacccataatttgtataatcacttaatca 26312029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 39081329 - 39081521
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| |||||||||||| | ||||| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  39081329 acacgtatgagttttttctagactctagttttactttctggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 39081428  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
    |||||| |||||||||||||||||| |||||||||||||| |||||  |||||||||| ||||||||||||||||||| | |||||||||||||    
T  39081429 tgaaaagctatttcattgaaagaattacaacaattatttc-ttttcatataaaccattagttttcccctttcctacgacgtaggagtgacattc 39081521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 36060028 - 36059838
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | |||||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||    
T  36060028 gttttttctagactctagttctactttttagacaaaaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagttaatttaaaaagcta 36059929  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacga 218  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||| |||| | | ||||||||||| ||||||    
T  36059928 tttcattgaaagaaccacaacaatcatttcttttttgcataaaccattcgttttcccttttcccacgacgtatgagtgacattccaaacga 36059838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 29480759 - 29480570
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    |||||| |||| |||||||| |||||||||||| ||||||| || ||| ||||||||||||||||| |||| |||||| ||||||||||||||||| |||    
T  29480759 ttttttttagactttagttcaactttctggacataaatttgatgctattaaaccaccatcaatttgaataaacacttattcagtcaatttgaaaaattat 29480660  T
Q  129 ttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||   ||||||||||||| ||||||    
T  29480659 ttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgtcttcccctttcttacgacataggagtgacattccaaacga 29480570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 13997245 - 13997442
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| |||||| ||||| | |||||  |||||||||||| ||||||| || |||  ||||||| |||||||| ||||||||||||| ||||||||    
T  13997245 acacgtatgagtttttcctagactctagtttcactttctggacataaatttgatgctattgaaccaccgtcaatttgaataatcacttaatgagtcaatt 13997344  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||| ||||    
T  13997345 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgtttt-ccctttcctacgacgtatgagtgacattccaaac 13997442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 1418841 - 1419033
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| |||||||||||| | |||||||||||| | |||| || |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  1418841 acacgtatgagttttttctagactctagttctactttttagacataa-tttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 1418939  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
    || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||  ||||||||| || | | |||||||||||    
T  1418940 tgtaaagctatttcattgaaagaatcacaacaattatttctttttcgcataaactattcattttttcctttcctatgacgtatgagtgacattc 1419033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 21747351 - 21747191
Alignment:
Q  30 tttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 129  Q
    |||||||||| ||||||||| || |||| ||| |||| || |  ||||||||||||  ||||||||||||||||||||||||||||||| ||| |||||     
T  21747351 tttttctagactttagttcttctatctgaacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttaaaatactatg 21747252  T
Q  130 tcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  21747251 tcattgaaagaatcacaacaataatttctttttcacataaaccattcgtttttccctttcc 21747191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 38599359 - 38599509
Alignment:
Q  44 agttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatc 143  Q
    ||||||| ||| |||| | ||||||| || ||||||| ||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38599359 agttctattttatggatataaatttgatgctatcaaatcattatcaatttgtataatcacttaatcaatcaatttgaaaaactatttcattgaaagaatc 38599458  T
Q  144 acaacaattatttctttttcgcataaaccattcgttttcccctttcctacga 195  Q
    | ||||||||||| |||||  |||||||||||||||||||||||||| ||||    
T  38599459 aaaacaattatttattttt-tcataaaccattcgttttcccctttcccacga 38599509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 18173062 - 18172901
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| |||| |||| || | |||||| |||| || |  ||||||||||||   |||||||||||||||||||||| |||||||||||| |||    
T  18173062 gttttttctagacttta-ttctcctatatggacataaatctggtactatcaaaccacccctaatttgtataatcacttaatcactcaatttgaaaagcta 18172964  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  18172963 tttcatcgaaagaatcacaacaatcatttctttttcacataaaccattcgttttcccctttcc 18172901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 27302661 - 27302491
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||||| || |||||||||||| | || |||| || |||||||||||||| | || || |||| |||| ||||||||||||||||||||||| |||||||    
T  27302661 acacatttgagttttttctagactctaattcttctgtctggacaaaaattcgatgctaccaaatcaccctcaatttgtataatcacttaatcggtcaatt 27302562  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccccttt 188  Q
    |||||| |||| ||||| |||||||||||||||| |||| ||||||||||||||||||| ||||| |||||    
T  27302561 tgaaaagctatatcattaaaagaatcacaacaatcatttatttttcgcataaaccattcattttcaccttt 27302491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 38985831 - 38985672
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||| | |||| |||| || |||||||| ||||||| |  ||||||||||||  ||||||||||||||| ||||||| |||||||||||| |||    
T  38985831 gttttttctaaacttta-ttctcctatctggacataaatttggtactatcaaaccacctccaatttgtataatcatttaatcaatcaatttgaaaagcta 38985733  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccccttt 188  Q
    |||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||    
T  38985732 tttcattgaaagaatcacaacaatcatttctttttcacataaaacatttgttttccccttt 38985672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 15457441 - 15457604
Alignment:
Q  28 gttttttctagattttagttctactt-tctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaact 126  Q
    |||||||||||| |||||||| |||| || ||||| |||| || |  |||||||| |||  |||||||||||||||||||||||||||||||||||| ||    
T  15457441 gttttttctagactttagttc-acttatccggacataaatctggtactatcaaactacccccaatttgtataatcacttaatcagtcaatttgaaaagct 15457539  T
Q  127 atttcattgaaagaatcacaacaatta-tttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||| |||||||||||||||||||| | ||| |||||| || |||||||||||||||||||||||    
T  15457540 attttattgaaagaatcacaacaataattttttttttcacacaaaccattcgttttcccctttcc 15457604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 17117759 - 17117606
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||||||||| ||| || |||||||| |||| || |  ||||||||||||  |||||||||||||||        ||||||||||||| ||||    
T  17117759 ttttttctagattttagctctcctatctggacataaatctggtactatcaaaccacccccaatttgtataatca--------gtcaatttgaaaagctat 17117668  T
Q  129 ttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  17117667 ttcattgaaagaatcacaacaatcatttctttttcatataaaccattcgttttcccctttcc 17117606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 18916175 - 18916015
Alignment:
Q  30 tttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 129  Q
    |||||||||| ||||||||| |  |||||||| |||| || |  |||||||||| |  ||||||||||||||||||||||| |||||||||||| |||||    
T  18916175 tttttctagactttagttcttcaatctggacataaatctggtactatcaaaccatccccaatttgtataatcacttaatcaatcaatttgaaaagctatt 18916076  T
Q  130 tcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    ||| ||||||||||||| |||| ||||||||||| ||||||| ||| ||||| ||||||||    
T  18916075 tcactgaaagaatcacagcaatcatttctttttcacataaactatttgtttttccctttcc 18916015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 19367541 - 19367381
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||| |||| || ||| ||||  | |  ||||||||||||   ||||||||||||||||||||||||||||||||||| ||||    
T  19367541 ttttttctagactctagttctcctttttgtacataaatcggattctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctat 19367442  T
Q  129 ttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||| |||| ||| |||| |||||||||||||||| ||||||    
T  19367441 ttcattgaaagaatcacaacaatcatttttttcttcgaataaaccattcgttttacccttt 19367381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 26151824 - 26151704
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  26151824 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 26151725  T
Q  173 attcgttttcccctttcctac 193  Q
    ||||||||| |||||| ||||    
T  26151724 attcgttttacccttttctac 26151704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 51 - 190
Target Start/End: Complemental strand, 31273265 - 31273127
Alignment:
Q  51 ctttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaa 150  Q
    ||||||||||  ||||||| |||||||||||||||  ||||||||||||||| |||||||||||||||| || ||||||||||| ||||||||| ||||     
T  31273265 ctttctggacttaaatttgatgttatcaaaccaccc-caatttgtataatcatttaatcagtcaatttggaatactatttcattaaaagaatcataacat 31273167  T
Q  151 ttatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    | ||||||||||||||||||||||| ||||| | ||||||    
T  31273166 tcatttctttttcgcataaaccatttgtttttctctttcc 31273127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 41096600 - 41096499
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccattcgttttcccct 186  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||  ||||||| ||||||||||||| ||||    
T  41096600 aatttgtataatcacttaatcagtcaatttggaaaactatttcattgaaagaatcacaacaatcattttttttcttcgcattaaccattcgttttaccct 41096501  T
Q  187 tt 188  Q
    ||    
T  41096500 tt 41096499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 4855980 - 4856088
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   |||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  4855980 tatcaaaccacccctaatttgtataatcacttaatcagtgaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 4856079  T
Q  173 attcgtttt 181  Q
    |||||||||    
T  4856080 attcgtttt 4856088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 6530646 - 6530754
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatt-tctttttcgcataaacc 172  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||| | || ||||||||||||    
T  6530646 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaaggtatttcattgaaagaatcacaacaatcattattttcttcgcataaacc 6530745  T
Q  173 attcgtttt 181  Q
    |||||||||    
T  6530746 attcgtttt 6530754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 13020410 - 13020518
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |||| ||| ||||||||||||    
T  13020410 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcatttaaagaatcacaacaataatttttttcttcgcataaacc 13020509  T
Q  173 attcgtttt 181  Q
    |||||||||    
T  13020510 attcgtttt 13020518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 34061989 - 34061818
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 117  Q
    |||| |||| ||||||| |||| | ||||||| |||| || ||| |||| || |  ||||||||||||   ||||||||| || ||||||||||||||||    
T  34061989 acacgtatgagttttttttagactatagttcttctttttgtacataaatctggtcctatcaaaccacccataatttgtatgattacttaatcagtcaatt 34061890  T
Q  118 tgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    || ||| ||||||||||||||||||||||||||| |||| ||| |||||||||||||| |||||| ||||||    
T  34061889 tggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccatccgttttacccttt 34061818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 7993619 - 7993735
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaa--ttatttctttttcgcataaac 171  Q
    ||||||||||||   ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||  || ||| || |||||||||||    
T  7993619 tatcaaaccacccctaatttgtataatcacttaatcagccaatttggaaagctatttcattgaaagaatcacaacaatctttttttttcttcgcataaac 7993718  T
Q  172 cattcgttttccccttt 188  Q
    |||||||||| ||||||    
T  7993719 cattcgttttacccttt 7993735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 42411681 - 42411520
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | ||||||| |||| || ||| ||||  | |  ||||||||||||   |||||||||||||||||||| |||||||||| ||| |||    
T  42411681 gttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaattagtcaatttggaaagcta 42411582  T
Q  128 tttcattgaaagaatcacaacaattatttctt-tttcgcataaaccattcgttttccccttt 188  Q
    ||||||| |||||||||||||||| |||| ||  ||||||||||||||||||||| ||||||    
T  42411581 tttcatttaaagaatcacaacaatcattttttacttcgcataaaccattcgttttacccttt 42411520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 2063792 - 2063900
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttt-tcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||  |||| |||||    
T  2063792 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcattttttttcccgcaaaaacc 2063891  T
Q  173 attcgtttt 181  Q
    |||||||||    
T  2063892 attcgtttt 2063900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 45042331 - 45042485
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatt---tgaaaaac 125  Q
    ||||||||||| | ||||||| ||||  | ||| ||||||| |  ||||||||||||   |||||||||||||||||||||||||||||   |||||  |    
T  45042331 ttttttctagactctagttcttcttttcgtacataaatttgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggtgaaagtc 45042430  T
Q  126 tatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgtt 179  Q
    |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  45042431 tatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgtt 45042485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 45618964 - 45619078
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  45618964 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttg-gaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 45619062  T
Q  173 attcgttttccccttt 188  Q
    ||| ||||| ||||||    
T  45619063 atttgttttacccttt 45619078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 18676373 - 18676272
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccattcgttttcccct 186  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||  || |||||||||||||||||| ||||    
T  18676373 aatttgtataataacttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcattttttttctttgcataaaccattcgttttaccct 18676274  T
Q  187 tt 188  Q
    ||    
T  18676273 tt 18676272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 1226388 - 1226234
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| | || |||| ||||  ||||| |||| || || || ||||||||| ||||||| |||||||||| |||||| |||||||||||  ||    
T  1226388 gttttttctagactctaattctccttt--ggacataaatctgatgctaccaaaccaccctcaatttatataatcactcaatcagacaatttgaaaagtta 1226291  T
Q  128 tttcattgaaa-gaatcacaacaattatttctttttcgcataaaccattcgttttcc 183  Q
    ||||| | ||| ||||||||||||| ||||||||||||||||||||||| |||||||    
T  1226290 tttcaataaaaagaatcacaacaatcatttctttttcgcataaaccatttgttttcc 1226234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 25222325 - 25222425
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttcccctt 187  Q
    |||||||||||||||||||| |||||||||  |||  |||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  25222325 aatttgtataatcacttaattagtcaatttagaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccctt 25222424  T
Q  188 t 188  Q
    |    
T  25222425 t 25222425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 42759802 - 42759718
Alignment:
Q  105 taatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||| |||  |||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||    
T  42759802 taatcagtcaatttggaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttt 42759718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 12269412 - 12269519
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||  ||||| ||| |||||||||| ||| |||||| ||||| |||| ||| ||| ||||||||    
T  12269412 tatcaaaccacccctaatttgtataatcacttaatcagt-gatttggaaagctatttcattaaaaaaatcaccacaatcatttttttcttcacataaacc 12269510  T
Q  173 attcgtttt 181  Q
    |||||||||    
T  12269511 attcgtttt 12269519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 18482611 - 18482488
Alignment:
Q  47 tctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttga-aaaactatttcattgaaagaatcac 145  Q
    |||| ||| |||||| ||||||| || || ||||| |||  |||||||||||||| |||||||||||||||| | | |  ||||||||||||||||| ||    
T  18482611 tctagtttatggacataaatttgatgctaacaaactacccccaatttgtataatcgcttaatcagtcaatttaacacagttatttcattgaaagaataac 18482512  T
Q  146 aacaattatttctttttcgcataa 169  Q
    |||||| || |||||||| |||||    
T  18482511 aacaataatgtctttttctcataa 18482488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 36481432 - 36481496
Alignment:
Q  125 ctatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||| ||||||    
T  36481432 ctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcattttacccttt 36481496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 12072456 - 12072570
Alignment:
Q  43 tagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaat 142  Q
    ||||||| |||| ||||||| ||||   |||||||||||||   ||||||| |||||||||||||||| ||||||| ||||  ||||||    |||||||    
T  12072456 tagttctcctttttggacaagaattcaatgttatcaaaccat--tcaatttatataatcacttaatcaatcaatttaaaaagttatttc----aaagaat 12072549  T
Q  143 cacaacaattatttctttttc 163  Q
    ||||||||||  |||||||||    
T  12072550 cacaacaattccttctttttc 12072570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 32186279 - 32186211
Alignment:
Q  22 atatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaa 90  Q
    ||||| |||||||||||| | |||||||||||| | |||| ||||||| || |||||||||||||||||    
T  32186279 atatgagttttttctagactctagttctactttttagacataaatttgatgctatcaaaccaccatcaa 32186211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 13001655 - 13001740
Alignment:
Q  105 taatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    |||| |||||||||  ||| |||||||||| |||||||||||| ||| |||| ||||  | ||| || |||||||||| |||||||    
T  13001655 taattagtcaatttataaagctatttcattaaaagaatcacaataatcattttttttcagtatatacaattcgttttctcctttcc 13001740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 27157868 - 27157917
Alignment:
Q  234 aatataatgtggcattgccatagctcagcttatggggg-caccatagtgg 282  Q
    |||||||||||||| | ||||| ||||||||||||||| |||||||||||    
T  27157868 aatataatgtggcacttccataactcagcttatgggggccaccatagtgg 27157917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 3748690 - 3748508
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    |||||| |||||| |||||||||||| |||||| ||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||    
T  3748690 ttttttttagattctagttctactttttggacataaatttgatgctatcaaaccgccatcaatttgtataatcacttaatcaatcaatttgaaaagctat 3748591  T
Q  129 ttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| | ||| | |||||||||||||    
T  3748590 ttcattgaaagaatcacaacaattatttctttgtcacataaactattcgttttcccctttcatgcgacgtaggagtgacattc 3748508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 30915488 - 30915302
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||    
T  30915488 ttttttctagactctagttctactttctggacataaatttgatgctatcaaacccccatcaatttgtataattacttaatcagtcaatttgaaaagctat 30915389  T
Q  129 ttcattgaaagaatcacaacaattatttc-----tttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacatt 210  Q
    || |||||||||||||||||||| |||||     ||||||||||||||||||| || ||||||||| ||||| | || |||||||||    
T  30915388 ttaattgaaagaatcacaacaatcatttctttaatttttcgcataaaccattcattatcccctttcttacgacgtagaagtgacatt 30915302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 1093163 - 1093002
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||||| || |||||||| ||||||| |  ||||||||||| | ||||| ||||||| ||| ||||||||||||| |||| |||    
T  1093163 gttttttctagactttagttctcctatctggacataaatttggtactatcaaaccactaccaattggtataatgactaaatcagtcaatttaaaaagcta 1093064  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  1093063 tttca-tgaaagaatcacaacaatcatttctttttcacataaaccattcgttttcccctttcc 1093002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 29308590 - 29308428
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||| | ||||||| | || |||||||| ||||||| |  ||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||    
T  29308590 gttttttctaaactttagtttttctatctggacataaatttggtactatcaaaccactaccaattggtataatgacttaatcagtcaatttgaaaaacta 29308491  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcc 190  Q
    ||||||||||  |||||||||||| ||||||||||| |||||| |||||||||||||||||||    
T  29308490 tttcattgaagtaatcacaacaatcatttctttttcacataaatcattcgttttcccctttcc 29308428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 2618296 - 2618457
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| |||||||||  ||| || ||| ||||  | |  ||||||||||||   ||||||||||||||||||||||||||||||||||| |||    
T  2618296 gttttttctagactttagttctcttttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagcta 2618395  T
Q  128 tttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||    
T  2618396 tttcattgaaagaatcacaacaattatttttttcttcgcataaaccattcgttttacccttt 2618457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 628173 - 628055
Alignment:
Q  73 ttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaac 171  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| |||||||||||    
T  628173 ttatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaac 628074  T
Q  172 cattcgttttcccctttcc 190  Q
    ||||||||||||| |||||    
T  628073 cattcgttttcccttttcc 628055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 19231554 - 19231707
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||| ||||||||||||||||||||| |||| || || |||||||| ||| |||||||||||| ||||||||||| |||||||||||| |||    
T  19231554 gttttttctagagtttagttctactttctggacataaatctggtgctatcaaactaccttcaatttgtata-tcacttaatcaatcaatttgaaaagcta 19231652  T
Q  128 tttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttc 182  Q
    |  |||||||| |||||||||||| |||||||||||| |||||| |||| |||||    
T  19231653 tgacattgaaaaaatcacaacaatcatttctttttcgtataaactattctttttc 19231707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 21946109 - 21946213
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||    
T  21946109 aatttgtataatcacttaatcagtctatttgaaaagctatttcattgaaagaaccataacaattatttctttttcgcataaacaattcgttttcctcttt 21946208  T
Q  189 cctac 193  Q
    |||||    
T  21946209 cctac 21946213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 1690756 - 1690621
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||| ||||||||||| || | |||||| |||| || |  ||||||||||||| |||||||||||||||||| |||| ||||||||||||  ||    
T  1690756 gttttttctaaattttagttctcctatttggacataaatctggtactatcaaaccaccaccaatttgtataatcacttgatcaatcaatttgaaaattta 1690657  T
Q  128 tttcattgaaagaatcacaacaattatttctttttc 163  Q
    |||||||||||||||||||||||| |||||||||||    
T  1690656 tttcattgaaagaatcacaacaatcatttctttttc 1690621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 12614793 - 12614678
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  12614793 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 12614694  T
Q  173 attcgttttccccttt 188  Q
    || |||||| ||||||    
T  12614693 atccgttttacccttt 12614678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 6294279 - 6294385
Alignment:
Q  112 tcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattc 211  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| | |||||||||||||    
T  6294279 tcaatttgaaaagcaatttcattgaaagaatcacaacaatcatttctttttcgcataaactattcgttttcccctttcccacgacgtaggagtgacattc 6294378  T
Q  212 taaacga 218  Q
     ||||||    
T  6294379 caaacga 6294385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 6754147 - 6754308
Alignment:
Q  28 gttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaacta 127  Q
    |||||||||||||| |||||||  ||| || ||| ||||  | |  |||||||||| |   |||||||||| |||||||||||||||||||| ||| |||    
T  6754147 gttttttctagattctagttctcttttttgtacataaatcggatcctatcaaaccatccctaatttgtatagtcacttaatcagtcaatttggaaagcta 6754246  T
Q  128 tttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||    
T  6754247 tttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttt 6754308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 57675 - 57790
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||||||| |||| ||| ||||||||||||    
T  57675 tatcaaaccacccataatttgtataatcacttaatcagtcaatttagaaagctatttcattcaaagaatcacaacaatcatttttttcttcgcataaacc 57774  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  57775 attcgttttacccttt 57790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 6360747 - 6360861
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||| |||| ||| |||| |||||||    
T  6360747 tatcaaaccacccttaatttgtataatcacttaatcagtcaatttgaaaagtta-ttcattgaaagaatcacaacaatcatttttttcttcgtataaacc 6360845  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  6360846 attcgttttacccttt 6360861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 31860946 - 31861065
Alignment:
Q  30 tttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 129  Q
    |||||||||| ||||||||| || |||||||| |||| || | | |||||||||||  ||||||||||||| |||||||||||||||||||||| |||||    
T  31860946 tttttctagactttagttcttctatctggacataaatctggtat-atcaaaccaccc-caatttgtataattacttaatcagtcaatttgaaaagctatt 31861043  T
Q  130 tcattgaaagaatcacaacaat 151  Q
    ||||||||||||||||||||||    
T  31861044 tcattgaaagaatcacaacaat 31861065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 29149405 - 29149505
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttcccctt 187  Q
    ||||||||||||||||||||||||||||||| |||  || ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  29149405 aatttgtataatcacttaatcagtcaatttggaaagttagttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccctt 29149504  T
Q  188 t 188  Q
    |    
T  29149505 t 29149505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 29401142 - 29401242
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttcccctt 187  Q
    |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||| ||| |||||||||||||||||| || |||||    
T  29401142 aattagtataatcacttaatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgtcttaccctt 29401241  T
Q  188 t 188  Q
    |    
T  29401242 t 29401242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 3514927 - 3514812
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||| |||||| |||||||| ||| |||| |||||||||||||||||||||| |||| ||| ||||||||||||    
T  3514927 tatcaaaccacccctaatttgtataatcacgtaatcattcaatttggaaagctatatcattgaaagaatcacaacaatcatttttttcttcgcataaacc 3514828  T
Q  173 attcgttttccccttt 188  Q
    ||||||||| ||||||    
T  3514827 attcgttttacccttt 3514812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 350383 - 350508
Alignment:
Q  56 tggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttc-attgaaagaatcacaacaattat 154  Q
    |||||| |||| || || |||||||||||||||||||| |||||||||| |||||||||||||  ||| ||||||| ||  |||||||||||||||| ||    
T  350383 tggacataaatatgatgctatcaaaccaccatcaatttatataatcactcaatcagtcaatttcgaaagctatttcaataaaaagaatcacaacaatcat 350482  T
Q  155 ttctttttcgcataaaccattcgttt 180  Q
    ||||||||||||||||| ||| ||||    
T  350483 ttctttttcgcataaacaatttgttt 350508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 7525243 - 7525128
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaacc 172  Q
    ||||||||||||   ||||||||||||||||||||||||||||||| |||  ||||| |||||||||||||||||||| |||| ||| |||||||||||     
T  7525243 tatcaaaccacccataatttgtataatcacttaatcagtcaatttggaaagttattttattgaaagaatcacaacaatcatttttttcttcgcataaaca 7525144  T
Q  173 attcgttttccccttt 188  Q
    |||  |||| ||||||    
T  7525143 atttattttacccttt 7525128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 22503751 - 22503845
Alignment:
Q  95 tataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |||| ||| |||| ||||||||||| |||| ||||||    
T  22503751 tataatcacttaatcagtcaatttgaaaaactatttcgttgaaagaattaaaacaatcatttttttcttcgtataaaccattcattttacccttt 22503845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 7341140 - 7341228
Alignment:
Q  18 acacatatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcactta 106  Q
    ||||||||| |||||||||||| | |||||| |||||||||||| ||||||| |||||| |||||||| |||||||| |||||||||||    
T  7341140 acacatatgagttttttctagactctagttccactttctggacataaatttgatgttattaaaccaccgtcaatttgaataatcactta 7341228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 14893479 - 14893412
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattattt 156  Q
    |||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||| ||||    
T  14893479 aatttgtataattacttaatcagtcaatttgaaaaactatttcgttaaaagaatcacaacaatcattt 14893412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 11088564 - 11088640
Alignment:
Q  105 taatcagtcaatttgaaaaactatttcattgaaa-gaatcacaacaattatttctttttcgcataaaccattcgttt 180  Q
    ||||||||||||||||||| |||||||| | ||| ||||||||||||| |||||||||| |||||||||||| ||||    
T  11088564 taatcagtcaatttgaaaagctatttcaataaaaagaatcacaacaatcatttcttttttgcataaaccatttgttt 11088640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 31234869 - 31234956
Alignment:
Q  43 tagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttca 132  Q
    |||||||||||| | ||||| ||||   || |||||||||| |  ||||||||||||||||||||||| |||||||||||| ||||||||    
T  31234869 tagttctactttttagacaagaattcaatgctatcaaaccatc--caatttgtataatcacttaatcaatcaatttgaaaagctatttca 31234956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 6294215 - 6294286
Alignment:
Q  23 tatgggttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttg 94  Q
    |||| |||||||||||| | |||||||||||| ||| || ||||||| || |||||||||| ||||||||||    
T  6294215 tatgagttttttctagactctagttctactttttgggcataaatttgatgctatcaaaccatcatcaatttg 6294286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 1327594 - 1327638
Alignment:
Q  88 caatttgtataatcacttaatcagtcaatttgaaaaactatttca 132  Q
    ||||||||||||||||||||||| |||||||  ||||||||||||    
T  1327594 caatttgtataatcacttaatcaatcaatttagaaaactatttca 1327638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 272
Target Start/End: Original strand, 22944500 - 22944531
Alignment:
Q  241 tgtggcattgccatagctcagcttatgggggc 272  Q
    ||||||||||||||||||||||||||||||||    
T  22944500 tgtggcattgccatagctcagcttatgggggc 22944531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 272
Target Start/End: Original strand, 23866944 - 23866975
Alignment:
Q  241 tgtggcattgccatagctcagcttatgggggc 272  Q
    ||||||||||||||||||||||||||||||||    
T  23866944 tgtggcattgccatagctcagcttatgggggc 23866975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 31244006 - 31244092
Alignment:
Q  43 tagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttca 132  Q
    |||||||||||| | ||||| ||||   || |||||||||| |  ||||||||||||||||||||||| |||| ||||||| ||||||||    
T  31244006 tagttctactttttagacaagaattcaatgctatcaaaccatc--caatttgtataatcacttaatcaatcaa-ttgaaaagctatttca 31244092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 24405090 - 24405135
Alignment:
Q  241 tgtggcattgccatagctcagcttatggggg-caccatagtggaga 285  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  24405090 tgtggcactgccatagctcagcttatgggggccaccacagtggaga 24405135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 16652 - 16812
Alignment:
Q  29 ttttttctagattttagttctactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactat 128  Q
    ||||||||||| | ||||||| |||| || ||| ||||  | |  ||||||||||||   ||||||||||||||||||||||||||||||||||| ||||    
T  16652 ttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctat 16751  T
Q  129 ttcattgaaagaatcacaacaattat-ttctttttcgcataaaccattcgttttccccttt 188  Q
    |||||||||||||||||||| || || || || ||||||||||||||||||||| ||||||    
T  16752 ttcattgaaagaatcacaacgatcatatttttcttcgcataaaccattcgttttacccttt 16812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 17194 - 17101
Alignment:
Q  89 aatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaatta-tttctttttcgcataaaccattcgtttt 181  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||    
T  17194 aatttgtataatcacttaatcagtcaatttggaaagctatttcgttgaaagaatcacaacaatcattttcttcttcgcataaaccattcgtttt 17101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 8472 - 8354
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttttt--cgcataaac 171  Q
    ||||||||||||   |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||| |||||||| |||||  | || ||||    
T  8472 tatcaaaccacccataatttgtataatcaattaatcagtcaatttcgaaaactatttcattgaaagaatcacaaaaattattttttttttccacacaaac 8373  T
Q  172 cattcgttttcccctttcc 190  Q
    |||||||||||||| ||||    
T  8372 cattcgttttcccccttcc 8354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 46250 - 46143
Alignment:
Q  74 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaacca 173  Q
    ||||||||||||   |||||| |||||||||||||||||||||||| ||  |||||||||||||| |||||||||||| |||| || ||| |||||||||    
T  46250 tatcaaaccacccataatttggataatcacttaatcagtcaatttggaagtctatttcattgaaataatcacaacaatcattttttcttcacataaacca 46151  T
Q  174 ttcgtttt 181  Q
    ||||||||    
T  46150 ttcgtttt 46143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 22844 - 22767
Alignment:
Q  112 tcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    ||||| |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||    
T  22844 tcaatatgaaaaactatttcattgaaagaatcacaataattatttttttcttcgcataaaccattcgttttacccttt 22767  T

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Target: scaffold0035; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 57728 - 57788
Alignment:
Q  228 gctaacaatataatgtggcattgccatagctcagcttatgggg-gcaccatagtggagata 287  Q
    ||||||| ||| |||||||  ||||||||||||||||||||||  ||||||||||||||||    
T  57728 gctaacagtatcatgtggccctgccatagctcagcttatggggcccaccatagtggagata 57788  T

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Target: scaffold0564 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 1086 - 1163
Alignment:
Q  112 tcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccattcgttttccccttt 188  Q
    |||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||    
T  1086 tcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttt 1163  T

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Target: scaffold0065 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 272
Target Start/End: Complemental strand, 26204 - 26173
Alignment:
Q  241 tgtggcattgccatagctcagcttatgggggc 272  Q
    ||||||||||||||||||||||||||||||||    
T  26204 tgtggcattgccatagctcagcttatgggggc 26173  T

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Target: scaffold0084 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 23985 - 24031
Alignment:
Q  240 atgtggcattgccatagctcagcttatgg-gggcaccatagtggaga 285  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||    
T  23985 atgtggcactgccatagctcagcttatggaggccaccatagtggaga 24031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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