View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_31 (Length: 303)
Name: NF1852_low_31
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_31 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 9574191 - 9574477
Alignment:
| Q |
17 |
acatgtaagactggcacttgaccgtgagaaactttttcacacaagaagtgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcgg |
116 |
Q |
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| T |
9574191 |
acatgtaagactcgcacttgaccatgagaaactttttcacacaagaagtgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcgg |
9574290 |
T |
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| Q |
117 |
atagatacattgcagcaacattaacacaatataccaaagtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttaga |
216 |
Q |
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| T |
9574291 |
atagatacattgcagcaacattaacacaatataccaaagtagcttttgtaactggacaatgtagttctaaaagtaagtttctaatcaagcaagatttaga |
9574390 |
T |
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| Q |
217 |
cacaacattagctactcctcggtactctgcacttaatcgaggcaaggcataatgtatttttgcataataagagatcaaattatcacc |
303 |
Q |
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| T |
9574391 |
cagaacattagctactcctcgatactctgcacttaatcgaggcaaggcataatgtatttttgcataataagagatcaagttatcacc |
9574477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 9565326 - 9565406
Alignment:
| Q |
17 |
acatgtaagactggcacttgaccgtgagaaactttttcacacaagaagtgtatattcatttcaatgtatttggtgtgttat |
97 |
Q |
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| T |
9565326 |
acatgttagactcgcacttgactgggagaaactttttcgcccaagaagtgtatgttcatatcaatgtgtttggtgtgttat |
9565406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 10533485 - 10533587
Alignment:
| Q |
141 |
cacaatataccaaagtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggta |
240 |
Q |
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| T |
10533485 |
cacaataaaccaaagtggctgttgtgactgggcaatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggcgactccgcggta |
10533584 |
T |
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| Q |
241 |
ctc |
243 |
Q |
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||| |
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| T |
10533585 |
ctc |
10533587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 8045304 - 8045214
Alignment:
| Q |
35 |
tgaccgtgagaaactttttcacacaagaagtgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcggatagataca |
125 |
Q |
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| T |
8045304 |
tgaccgcgagtaactttttcccgcacaaagtgtatatcaatttcgatgtgtttggtgcgttgatgttgaactggattgtcggatagataca |
8045214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 22949640 - 22949570
Alignment:
| Q |
173 |
caatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggtactc |
243 |
Q |
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| T |
22949640 |
caatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggcgactccgcggtactc |
22949570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 243
Target Start/End: Original strand, 25623847 - 25624025
Alignment:
| Q |
65 |
tgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcggatagatacattgcagcaacattaacacaatataccaaagtagcttttg |
164 |
Q |
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| T |
25623847 |
tgtatattcatctcgatgtgtttggtgcgttgatgttggactgggttgccggataaatagacagcactcacattatcacaataaaccaaagtagatgttg |
25623946 |
T |
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| Q |
165 |
taaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggtactc |
243 |
Q |
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| T |
25623947 |
tgactgggcaatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggtgactccgcggtactc |
25624025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 5417079 - 5417139
Alignment:
| Q |
170 |
ggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagcta |
230 |
Q |
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| T |
5417079 |
ggacaatgtagttctgaaagttagtttctaatccaacatgattcaaacactacattagcta |
5417139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 91903 - 91801
Alignment:
| Q |
141 |
cacaatataccaaagtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggta |
240 |
Q |
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||||||| |||| ||| ||| |||| || || ||||||||||| || ||||||||||||||| | ||||||| ||| || ||||| || ||||| ||||| |
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| T |
91903 |
cacaataaaccagagtggctgttgtgactgggcaatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggcgactccgcggta |
91804 |
T |
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| Q |
241 |
ctc |
243 |
Q |
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||| |
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| T |
91803 |
ctc |
91801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 47249575 - 47249677
Alignment:
| Q |
141 |
cacaatataccaaagtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggta |
240 |
Q |
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| T |
47249575 |
cacaataaaccatagtagatgttgtgactgggcaatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggcgactccgcggta |
47249674 |
T |
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| Q |
241 |
ctc |
243 |
Q |
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||| |
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| T |
47249675 |
ctc |
47249677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 42336483 - 42336435
Alignment:
| Q |
154 |
agtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatc |
202 |
Q |
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| T |
42336483 |
agtagcttttgtaacagaacaatgtatttctaaaagtaagattctaatc |
42336435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 3955255 - 3955185
Alignment:
| Q |
173 |
caatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggtactc |
243 |
Q |
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| T |
3955255 |
caatgtagttccaacagtaagtttctaatccaacaagatttagatactacattggcgactccgtggtactc |
3955185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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