View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_33 (Length: 294)
Name: NF1852_low_33
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 32 - 293
Target Start/End: Original strand, 31084336 - 31084620
Alignment:
| Q |
32 |
ctaagatgtattcgaattttctctatatacaatagtcataaaatatcaaactcctatcaacttgcttaaaggggttagatctattattgcttgaatcaat |
131 |
Q |
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| T |
31084336 |
ctaagatggattcgaattttccctatatacagtagtcataaaatatcgaactcctatcaacttgcttaaaggggttagatctattatcgcttgaatcaat |
31084435 |
T |
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| Q |
132 |
gca-ttgttgttaaacaaacgttaatttggaacggtaggcaggaattgagcaacataatcgaaaattcctgaggtgggccatattgattaaaaatatg-- |
228 |
Q |
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| T |
31084436 |
gcatttgttgttaaacaaacgttaatttggaactgtaggcaggaattgagcaacgaaatcgaaaattcctgaggtgggccatattgattaaaaatatgat |
31084535 |
T |
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| Q |
229 |
--------------------tggttactactgtatgataaaaataaagccttaattaaatgcttattcgttcaaaatatatactt |
293 |
Q |
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| T |
31084536 |
tacaagagctgtgaaaggactggttactactgtatgataaaaataaagccttaattaaatgcttattcgttcaaaatatatactt |
31084620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31083303 - 31083338
Alignment:
| Q |
1 |
actaatctatgtcaaggatattgtaggacatctaag |
36 |
Q |
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| T |
31083303 |
actaatctatgtcaaggatattgtaggacatctaag |
31083338 |
T |
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