View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1852_low_36 (Length: 261)
Name: NF1852_low_36
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 10951676 - 10951913
Alignment:
| Q |
12 |
atgaaaacttttgtaaatttgattgaaaaatagtgaaagaattgaaaggttaaatattaatggtggctacaacaaattggtgttggactgttgggtaatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10951676 |
atgaaaacttttgtaaatttgattgaaaaatagtgaaagaattgaaaggttaaatattaatggtggctacaacaaattggtgttggactgttgggtaatg |
10951775 |
T |
|
| Q |
112 |
aagcgtgaaaatttgacagagaagaccataaaaattactatgttcattcattgttattgtttctctattaaaaatcc----ctttctagtggctaagtta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10951776 |
aagcgtgaaaatttgacagagaagaccataaaaattactatgttcattcattgttattgtttctctattaaaaatccatggctttctagtggctaagtta |
10951875 |
T |
|
| Q |
208 |
tttttagttggatctggatttgaagaattatgagtctg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10951876 |
tttttagttggatctggatttgaagaattatgagtctg |
10951913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 4084413 - 4084177
Alignment:
| Q |
12 |
atgaaaacttttgtaaatttgattgaaaaatagtgaaagaattgaaaggttaaatattaatggtggctacaacaaattggtgttggactgttgggtaatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4084413 |
atgaaaacttttgtaaatttgattgacaaaaagtgaaagaattgaaaggttaaatattaatcgtggctacaacaaattggtgttggactcttgggtaatg |
4084314 |
T |
|
| Q |
112 |
aagcgtgaaaatttgacagagaagaccataaaaattactatgttcattcattgttattgtttctctattaaaaatcc----ctttctagtggctaagtta |
207 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4084313 |
aagcgtgaaaatttgacaaagaagaccataaaaattactatgttcattcattgttattgcttctctattaaaaatccatggctttctagtggctaagtta |
4084214 |
T |
|
| Q |
208 |
tttttagttggatctggatttgaagaattatgagtct |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4084213 |
tttttagttggatctggatttgaagaattatgagtct |
4084177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 245
Target Start/End: Complemental strand, 25593690 - 25593553
Alignment:
| Q |
111 |
gaagcgtgaaaatttgacagagaagaccataaaaattactatgttcattcattgttattgttt--ctctattaaaaatcc----ctttctagtggctaag |
204 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||| |
|
|
| T |
25593690 |
gaagcgtgaaaatttgacaaagaagaccat-aaaattactatgttcattcattgttgttgttttactctattaaaaatccaaggctttctagt-tctaag |
25593593 |
T |
|
| Q |
205 |
ttatttttagttggatctggatttgaagaattatgagtctg |
245 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
25593592 |
ttatttttagtcggat-tggatttgaagaattatgagtctg |
25593553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 51702969 - 51702850
Alignment:
| Q |
21 |
tttgtaaatttgattgaaaaatagtgaaagaattgaaaggttaaatattaatggtggctacaacaaattggtgttggactgttgggtaatgaagcgtgaa |
120 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
51702969 |
tttgtgaatttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattgg--------ttttgggtaatgaagcgtgaa |
51702878 |
T |
|
| Q |
121 |
aatttgacagagaagaccataaaaatta |
148 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
51702877 |
aatttgacagagaagaccacaaaaatta |
51702850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 20104826 - 20104939
Alignment:
| Q |
27 |
aatttgattgaaaaatagtgaaagaattgaaaggttaaatattaatggtggctacaacaaattggtgttggactgttgggtaatgaagcgtgaaaatttg |
126 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
20104826 |
aatttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattgg--------ttttgggtaatgaagcgtgaaaatttg |
20104917 |
T |
|
| Q |
127 |
acagagaagaccataaaaatta |
148 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
20104918 |
acagagaagaccacaaaaatta |
20104939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 53467044 - 53467155
Alignment:
| Q |
29 |
tttgattgaaaaatagtgaaagaattgaaaggttaaatattaatggtggctacaacaaattggtgttggactgttgggtaatgaagcgtgaaaatttgac |
128 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
53467044 |
tttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattgg--------ttttgggtaatgaagcgtgaaaatttgac |
53467135 |
T |
|
| Q |
129 |
agagaagaccataaaaatta |
148 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
53467136 |
agagaagaccatacaaatta |
53467155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 32394758 - 32394877
Alignment:
| Q |
21 |
tttgtaaatttgattgaaaaatagtgaaagaattgaaaggttaaatattaatggtggctacaacaaattggtgttggactgttgggtaatgaagcgtgaa |
120 |
Q |
| |
|
||||| |||||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
32394758 |
tttgtgaatttgatggaaaaataatgaatgaattgaaaggttaaatatttatggtggctacaacaaattgg--------ttttgggtaatgaagcgtgaa |
32394849 |
T |
|
| Q |
121 |
aatttgacagagaagaccataaaaatta |
148 |
Q |
| |
|
||||||| ||||||||||| |||||||| |
|
|
| T |
32394850 |
aatttgatagagaagaccacaaaaatta |
32394877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University