View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1852_low_37 (Length: 260)

Name: NF1852_low_37
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1852_low_37
NF1852_low_37
[»] chr5 (5 HSPs)
chr5 (3-169)||(25979219-25979385)
chr5 (170-246)||(25979423-25979499)
chr5 (1-68)||(17155869-17155936)
chr5 (5-68)||(30000167-30000230)
chr5 (1-61)||(29692355-29692415)
[»] chr4 (4 HSPs)
chr4 (3-68)||(48480788-48480853)
chr4 (1-68)||(1730451-1730518)
chr4 (1-68)||(4249224-4249291)
chr4 (1-61)||(37109320-37109380)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-68)||(81526-81593)
[»] chr3 (6 HSPs)
chr3 (1-68)||(46518675-46518742)
chr3 (1-61)||(53412992-53413052)
chr3 (1-68)||(15048023-15048090)
chr3 (1-68)||(34928903-34928970)
chr3 (3-68)||(34062510-34062575)
chr3 (1-49)||(8796074-8796122)
[»] chr8 (1 HSPs)
chr8 (1-68)||(33017261-33017327)
[»] chr7 (4 HSPs)
chr7 (1-52)||(7744090-7744141)
chr7 (1-68)||(17113842-17113909)
chr7 (1-68)||(43215231-43215298)
chr7 (3-49)||(13106763-13106809)
[»] chr2 (3 HSPs)
chr2 (1-68)||(13803542-13803609)
chr2 (1-68)||(34041550-34041617)
chr2 (1-67)||(45026790-45026856)
[»] chr1 (5 HSPs)
chr1 (1-68)||(2799909-2799976)
chr1 (1-68)||(33700735-33700802)
chr1 (1-68)||(36371517-36371584)
chr1 (1-66)||(8904461-8904526)
chr1 (1-61)||(9165164-9165224)
[»] chr6 (1 HSPs)
chr6 (1-47)||(20863422-20863468)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 25979219 - 25979385
Alignment:
Q  3 ctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttcttnnnnnnnncattgaatattgattattgtcataga 102  Q
    ||||||||||||||||||| ||  | ||||||| |||  ||||||| ||| |||||||| ||||||        |||||| |||||||||||||||||||    
T  25979219 ctcctcctcaaggtctcaggttcgattctctcttatgtcaatttgatggggttaatttagcttcttaaaaaaaacattgagtattgattattgtcataga 25979318  T
Q  103 tataaagtgtagtataatgaacatgagagtgttccttaattgtgcaaaactaacattcctcatgatg 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25979319 tataaagtgtagtataatgaacatgagagtgttccttaattgtgcaaaactaacattcctcaggatg 25979385  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 25979423 - 25979499
Alignment:
Q  170 caattttcattggacgtgtcaatttgttttagatagtttttatattattgaagtaaaaatatctatcgacaatcatc 246  Q
    ||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  25979423 caattatcattggacgtgtcaatttgtttttgttagtttttatattattgaagtaaaaatatctatcgacaatcatc 25979499  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17155869 - 17155936
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||||||||||||||||| ||| | ||||| || ||| |||||||| ||  ||||||||||||||    
T  17155869 tgctcctcctcaaggtctcaggtttgattctctgtgctgccaatttgagtgggctaatttaacttctt 17155936  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 30000167 - 30000230
Alignment:
Q  5 cctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||| ||||||||| ||  |||||||||||||| ||||| || || |||||||||||||||    
T  30000167 cctcctcgaggtctcaggttcgactctctctgatgccaatttaagtgggttaatttaacttctt 30000230  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29692415 - 29692355
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaattta 61  Q
    ||||||||||||| ||||||| ||||| |||||| ||||| |||||| | ||| |||||||    
T  29692415 tgctcctcctcaaagtctcaggtttaattctctccgatgccaatttgggtggactaattta 29692355  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 48480853 - 48480788
Alignment:
Q  3 ctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||||||||||||||||||||| ||||| |||||  ||||||||||| ||| |||| ||||||    
T  48480853 ctcctcctcaaggtctcagatttaattctctgtgatgtcaatttgaggggcttagtttagcttctt 48480788  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 1730518 - 1730451
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    |||||||| |||| ||||||||||  | |||||||| ||||||||||||||||||| |||| ||||||    
T  1730518 tgctcctcttcaaagtctcagattctattctctctggtgctaatttgaggggattagtttagcttctt 1730451  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4249224 - 4249291
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||||||||||||||||| ||| | |||||||| ||| ||||||||||| ||| |||| ||||||    
T  4249224 tgctcctcctcaaggtctcaggtttgattctctctggtgccaatttgagggggttagtttagcttctt 4249291  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 37109380 - 37109320
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaattta 61  Q
    ||||||||||||||||||||| ||  | |||||||| ||| ||||||||||| ||| ||||    
T  37109380 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagttta 37109320  T

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Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 81593 - 81526
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||||||||||||||||||||  | |||| ||||||| ||||||||||  ||| |||||||||||    
T  81593 tgctcctcctcaaggtctcagattcgattctccctgatgccaatttgagggagttagtttaacttctt 81526  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 46518675 - 46518742
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    |||||||||||||||| |||| ||| | |||||||||||| ||||||||||| ||| |||| ||||||    
T  46518675 tgctcctcctcaaggtttcaggtttgattctctctgatgccaatttgagggggttagtttagcttctt 46518742  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 53412992 - 53413052
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaattta 61  Q
    ||||||||||||||||||||| || || |||||||| ||| ||||||||||| ||| ||||    
T  53412992 tgctcctcctcaaggtctcaggttcaattctctctggtgccaatttgagggggttagttta 53413052  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 15048090 - 15048023
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||||||||||||||||| ||  | | |||||| ||| ||||||||||| ||| |||||||||||    
T  15048090 tgctcctcctcaaggtctcaggttcgattatctctggtgccaatttgagggggttagtttaacttctt 15048023  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 34928970 - 34928903
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    |||||||||| |||||||||||||  | ||||||| |||||||||| || |  |||||||||||||||    
T  34928970 tgctcctccttaaggtctcagattcgattctctctaatgctaatttaagagagttaatttaacttctt 34928903  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 34062575 - 34062510
Alignment:
Q  3 ctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||||||||||||||| || || |||||||| ||| |||||||||   ||| |||||||||||    
T  34062575 ctcctcctcaaggtctcaggttcaattctctctggtgccaatttgaggatgttagtttaacttctt 34062510  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8796122 - 8796074
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgag 49  Q
    ||||||||||||||||||||  ||  | |||||||||||||||||||||    
T  8796122 tgctcctcctcaaggtctcaagttcgattctctctgatgctaatttgag 8796074  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 33017261 - 33017327
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||||||||||||||||| ||  | |||||||| ||| ||||||||||| ||| |||||||||||    
T  33017261 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggg-ttagtttaacttctt 33017327  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7744141 - 7744090
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgagggg 52  Q
    ||||||||||||||||||||| ||| | |||||||| ||| |||||||||||    
T  7744141 tgctcctcctcaaggtctcaggtttgattctctctggtgcaaatttgagggg 7744090  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17113842 - 17113909
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    |||| |||||||||||||||  ||  | |||||||||||||||||||||||| ||| |||| ||||||    
T  17113842 tgcttctcctcaaggtctcaagttcgattctctctgatgctaatttgagggggttagtttagcttctt 17113909  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 43215231 - 43215298
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||||||||||||||||| ||  | ||||||| |||| ||||||||||| ||| |||| ||||||    
T  43215231 tgctcctcctcaaggtctcaggttcgattctctcttatgccaatttgagggggttagtttagcttctt 43215298  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 13106809 - 13106763
Alignment:
Q  3 ctcctcctcaaggtctcagatttaactctctctgatgctaatttgag 49  Q
    ||||||||||||||||||| ||  | |||||||||||||||||||||    
T  13106809 ctcctcctcaaggtctcaggttcgattctctctgatgctaatttgag 13106763  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 13803542 - 13803609
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||||||||||||||||| ||  | | |||||||||| ||||||||||| ||| |||| ||||||    
T  13803542 tgctcctcctcaaggtctcaggttcgattatctctgatgccaatttgagggggttagtttaccttctt 13803609  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 34041617 - 34041550
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||||||||||||||||| ||| | || ||||| ||| ||||||||||| ||| |||| ||||||    
T  34041617 tgctcctcctcaaggtctcaggtttgattccctctggtgccaatttgagggggttagtttagcttctt 34041550  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 45026790 - 45026856
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttct 67  Q
    ||||||||||||||||||||  ||| | |||||||| ||| ||||||||||| ||| |||| |||||    
T  45026790 tgctcctcctcaaggtctcatgtttgattctctctggtgccaatttgagggggttagtttagcttct 45026856  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 2799909 - 2799976
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||||||||||||||||| ||  | |||||||| ||| ||||||||||| ||| |||| ||||||    
T  2799909 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagtttagcttctt 2799976  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 33700802 - 33700735
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    ||||||||||||||||||||| ||  | |||||||| ||| ||||| ||||| ||| |||||||||||    
T  33700802 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttaagggggttagtttaacttctt 33700735  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 36371517 - 36371584
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttctt 68  Q
    |||||||||||||||||| || ||  | |||||||||||| ||||||||||| ||| |||| ||||||    
T  36371517 tgctcctcctcaaggtctgaggttcgattctctctgatgccaatttgagggggttagtttagcttctt 36371584  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8904461 - 8904526
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaatttaacttc 66  Q
    ||||||||||||||||||||  ||  | |||||||| ||| ||||||||||| ||| |||||||||    
T  8904461 tgctcctcctcaaggtctcaagttcgattctctctggtgccaatttgagggggttagtttaacttc 8904526  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9165224 - 9165164
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttgaggggattaattta 61  Q
    ||||||||||||| ||||||| || || |||||||| ||| ||||||||||| ||| ||||    
T  9165224 tgctcctcctcaaagtctcaggttcaattctctctggtgccaatttgagggggttacttta 9165164  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20863422 - 20863468
Alignment:
Q  1 tgctcctcctcaaggtctcagatttaactctctctgatgctaatttg 47  Q
    ||||||||||||||||||||||||| | ||||||| |||| ||||||    
T  20863422 tgctcctcctcaaggtctcagatttgattctctctaatgccaatttg 20863468  T

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