View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_39 (Length: 255)
Name: NF1852_low_39
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 1778990 - 1778752
Alignment:
| Q |
4 |
ttataacgcttaaagatgttagaatcaatttatgtttagagaatgactcttttctccctcaaaaataattttaaacatgtatgcattcagtattttcaaa |
103 |
Q |
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| T |
1778990 |
ttataacgattaaagatgttagaatcaatttatgtctagagaatgactcttttctccctcaaaaataattttaaacatgtatgcattcagtattttcaaa |
1778891 |
T |
|
| Q |
104 |
ttcaattactttatctctatacgttaatttaattcttcaaattaattttttaactcacaattaaaataacttttatactcaatttactttaaccaaattc |
203 |
Q |
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| T |
1778890 |
ttcaattactttatctctatacgttaatttaattcttcaaattaattttttaactcacaattaaaataacttttatactcaatttactttaaccaaattc |
1778791 |
T |
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| Q |
204 |
aattctagctattacaaggttaatttatttaatagtatt |
242 |
Q |
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| T |
1778790 |
aattctagctattacaaggttaatttatttaatagtatt |
1778752 |
T |
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