View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_40 (Length: 254)
Name: NF1852_low_40
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 17273778 - 17273534
Alignment:
| Q |
2 |
cttgttcaaaaaatatatacaaaataaagaagtannnnnnnnnaaagaacaaaataaagaagtatgtataattgtttttcctttaataaaatgtataatt |
101 |
Q |
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| T |
17273778 |
cttgttcaaaaaatatatacaaaataaagaagtattctttttgaaagaacaaaataaagaagtatgtataattgtttttcctttaataaaatgtataatt |
17273679 |
T |
|
| Q |
102 |
cttttataacccacgtgtctaaatttgaaagccacatagaaaataatgaggacatatctaatacagcttttaatgcgcgttaatatatacatggtcaaac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17273678 |
cttttataacccacgtgtctaaatttgaaagccacatagaaaataatgaggacatatctaatacagcttttaatgcgcgttaatatatacgtggtcaaac |
17273579 |
T |
|
| Q |
202 |
taataaacataccaaaccaatcactagagttactatagaataatc |
246 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17273578 |
taataaacataccaaactaatcactagagttactatagaataatc |
17273534 |
T |
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