View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_41 (Length: 252)
Name: NF1852_low_41
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 1779144 - 1779378
Alignment:
| Q |
2 |
aaatttgtataaaagtgacaaacgtcatttgaaacttatacacatctnnnnnnntttaggtttgaatctaaataaacatgtccaatataacaatattaac |
101 |
Q |
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| T |
1779144 |
aaatttgtataaaagtggcaaacgtcatttgaaacttatacacatctaaaaaattttaagtttgaatctaaataaacatgtccaatataacaatattaac |
1779243 |
T |
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| Q |
102 |
gttgtgaaatccataattttcaacctttaactttaattttcaatctataaaatccataatttttcaaagtttattatat-nnnnnnnnnncgtattttta |
200 |
Q |
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| T |
1779244 |
gttgtga----gttaagct--aacctttaactttaattttcaatctataaaatccataatttttcaaagtttattatataaaaaaaaaaacgtattttta |
1779337 |
T |
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| Q |
201 |
gttaagaattatacgaaaaactcctagagaaatgtacctat |
241 |
Q |
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| T |
1779338 |
gttaagaattatacgaaaaactcctagagaaatgtacctat |
1779378 |
T |
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Back To:
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 34490514 - 34490466
Alignment:
| Q |
192 |
gtatttttagttaagaattatacgaaaaactcctagagaaatgtaccta |
240 |
Q |
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| T |
34490514 |
gtatttttagttaagaaccatacgaaaaacacctaaagaattgtaccta |
34490466 |
T |
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