View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_43 (Length: 248)
Name: NF1852_low_43
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_43 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 33768852 - 33769086
Alignment:
| Q |
8 |
ataatacttgtagtactctctaagtgacataactttgcccgatccaaaaattaaaatgaacattaattacctggatacttgcggtatttcttctggatcg |
107 |
Q |
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| T |
33768852 |
ataatacttgtagtactct--aagtgacataactttgcacgatacaaaaaataaaacgaacatta----cctgcatacttgcggtatttcttctggatcg |
33768945 |
T |
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| Q |
108 |
ggaggattgggacttacaaaaaatgaaattgagtccctccagttggcagcagggtccttaaaaaggctaccattagagaaatatcgaactttcttacttg |
207 |
Q |
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| T |
33768946 |
ggaggattgggacttacaaaaaatgaaagtgagtccctccagttggcagcagggtccgtaaaaaggctaccattagagaaatatcgaactttcttacttt |
33769045 |
T |
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| Q |
208 |
tatcccttgtataaaatggtttccttgcatcagcatcttgt |
248 |
Q |
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| T |
33769046 |
tatcccttgtataaaatggtttccttgcatcagcatcttgt |
33769086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 33764052 - 33764226
Alignment:
| Q |
74 |
ttacctggatacttgcggtatttcttctggatcgggaggattgggacttacaaaaaatgaaattgagtccctccagttggcagcagggtccttaaaaagg |
173 |
Q |
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| T |
33764052 |
ttacctgcatacttgtggtatttcttctggattaggaggatcaggactagtaaaaaatgcaattgtgtccctccagttagcagcagggtccctaaaaagg |
33764151 |
T |
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| Q |
174 |
ctaccattagagaaatatcgaactttcttacttgtatcccttgtataaaatggtttccttgcatcagcatcttgt |
248 |
Q |
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| T |
33764152 |
gtaccattagaaaaatatctgactttcttacttgtatcccttgtataaaatggtttccttgcatcaacttcttgt |
33764226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 33772193 - 33772353
Alignment:
| Q |
73 |
attacctggatacttgcggtatttcttctggatcgggaggattgggacttacaaaaaatgaaattgagtccctccagttggcagcagggtccttaaaaag |
172 |
Q |
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| T |
33772193 |
attacctgcatacttgaggtatttcttctggattaggaggatcaggacttacataaaaagaaattgtgtccctccagttagcagcatggttcttaaaaag |
33772292 |
T |
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| Q |
173 |
gctaccattagagaaatatcgaactttcttacttgtatcccttgtataaaatggtttcctt |
233 |
Q |
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| T |
33772293 |
gcttccattggagaaatatctaactttcttacttgtatcccttgtatagaatggtttcctt |
33772353 |
T |
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