View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_46 (Length: 244)
Name: NF1852_low_46
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 47505168 - 47504988
Alignment:
| Q |
33 |
gtatttggtgtatcgtcaccggaaaataaataacggaaagtagttgtatcgttgtcgaaaaatacctaataagtagagaaaagttgacgttcgcatagat |
132 |
Q |
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| T |
47505168 |
gtatttggtgtatcgtcaccggaaaataaataacagaaagtagttgtatcgttgtcgaaaaatacctaataagtagaga--------cgttcgcatagat |
47505077 |
T |
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| Q |
133 |
gggcatctcgatctaaatctcaacattcaaaa-acaccaacataattaacactttaataggataggatggtcataatttctcatgtacc |
220 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47505076 |
gggcatctcgatctaaatctcaacattcaaaacactccaacataattaacactttaataggataggatggtcataatttctcatgtacc |
47504988 |
T |
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