View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_47 (Length: 243)
Name: NF1852_low_47
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15633118 - 15633347
Alignment:
| Q |
1 |
actaaaacatctaacaaagtttcacctcggtcgagcatccccaaacaaacaggcaaccaaagtctaataatcgagtcatcctatgcggaatacgacgact |
100 |
Q |
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| T |
15633118 |
actaaaacatctaacaaagtttcacctcggtcgagcatccccaaacaaacaggcaaccaaagtctaatgatcgagtcatcctatgcggaatacgacgact |
15633217 |
T |
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| Q |
101 |
attagacgatgctaagggaaattgggctgaggaacttcatattgtgttatgggcatattgcaccactcctcgttcgaccacaggcgaatctccttttcgg |
200 |
Q |
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| T |
15633218 |
attagacgaagctaagggaaattgggctgaggaacttcatattgtgttatgggcatattgcaccactcctcgttcgaccacaggcgaatctccttttcgg |
15633317 |
T |
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| Q |
201 |
cttacatacggaactgaggtcgtcacccct |
230 |
Q |
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|||||||||||||| |||||||||||||| |
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| T |
15633318 |
cttacatacggaaccaaggtcgtcacccct |
15633347 |
T |
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