View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1852_low_5 (Length: 555)

Name: NF1852_low_5
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1852_low_5
NF1852_low_5
[»] chr6 (6 HSPs)
chr6 (343-543)||(20475372-20475572)
chr6 (31-308)||(20475040-20475321)
chr6 (418-543)||(20493265-20493387)
chr6 (457-514)||(20517317-20517374)
chr6 (106-162)||(9530542-9530598)
chr6 (451-516)||(6869786-6869851)
[»] chr1 (1 HSPs)
chr1 (111-171)||(8792967-8793027)
[»] chr8 (3 HSPs)
chr8 (99-162)||(10028902-10028965)
chr8 (106-195)||(21136582-21136670)
chr8 (129-193)||(29490604-29490667)
[»] chr5 (2 HSPs)
chr5 (119-165)||(36184524-36184570)
chr5 (138-195)||(9900225-9900281)
[»] scaffold0154 (1 HSPs)
scaffold0154 (96-165)||(6245-6314)
[»] chr7 (1 HSPs)
chr7 (113-162)||(30935367-30935416)
[»] chr3 (1 HSPs)
chr3 (106-162)||(31178860-31178916)
[»] chr2 (2 HSPs)
chr2 (119-171)||(17672952-17673004)
chr2 (111-155)||(18561612-18561656)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 343 - 543
Target Start/End: Original strand, 20475372 - 20475572
Alignment:
Q  343 gggatgatagaagtttcacttctttactattatataataaaggcatagattatttgacaacacaaacaaatttagagcatccttgtctaaccatgaaaca 442  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20475372 gggatgatagaagtttcacttgtttactattatataataaaagcatagattatttgacaacacaaacaaatttagagcatccttatctaaccatgaaaca 20475471  T
Q  443 tgttttagcactcaccctttccttcctcctgtttgttttcactaccaatctttcactagctttctcaaatgatgctgttgaacaagtattagacataaat 542  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20475472 tgttttatcactcaccctttccttcctcctgtttgttttcactaccaatctttcactagctttctcaaatgatgctgttgaacaagtattagacataaat 20475571  T
Q  543 g 543  Q
    |    
T  20475572 g 20475572  T

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Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 31 - 308
Target Start/End: Original strand, 20475040 - 20475321
Alignment:
Q  31 cacataattaaaatacaagcataattgaatcaataaactattgattatttatttttcggatgaaatatcaaaatagtctctgtctttataagttactctt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||||| ||    
T  20475040 cacataattaaaatacaagcataattgaatcaataaactattggttatttatttttcggaggaaatatcaaattagtctctgtctttataaattactttt 20475139  T
Q  131 aaattagtcttcaactttattaatatttcaaaatactcttttatcttattcaaaagtttctcaatattaagtccctcctcgtgtaataaaaacataaa-- 228  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||      
T  20475140 aaattagtcttcaactttattaatatttcaaaataatcttttatcatattcaaaagtttctcaatattaagtccctcatcgtgtaataaaaacataaagg 20475239  T
Q  229 -acagacttaatt-acaaacttatggcaaagactaatttaagatacaaatacaatccgtaattaatttgataatgacttacg 308  Q
     |  ||| ||||| | |||||| ||  |||| ||||||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  20475240 cagggacctaattaaaaaacttttgataaaggctaatttaaaatacaaatacactccgtaactaatttgataatgacttacg 20475321  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 20493265 - 20493387
Alignment:
Q  418 agcatccttgtctaaccatgaaacatgttttagcactcaccctttccttcctcctgtttgttttcactaccaatctttcactagctttctcaaatgatgc 517  Q
    ||||||| | |||||| ||||| ||| ||||| |||| |||||||||||| || | ||||||||||  ||||||||||||||||||  |||||||||       
T  20493265 agcatccctatctaacaatgaagcatcttttatcactaaccctttccttcttcatctttgttttcatcaccaatctttcactagctacctcaaatga--- 20493361  T
Q  518 tgttgaacaagtattagacataaatg 543  Q
    |||||| |||||||||||||||||||    
T  20493362 tgttgagcaagtattagacataaatg 20493387  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 457 - 514
Target Start/End: Original strand, 20517317 - 20517374
Alignment:
Q  457 ccctttccttcctcctgtttgttttcactaccaatctttcactagctttctcaaatga 514  Q
    |||||||||||||||| ||||||||||  || ||||||||||||| ||||||||||||    
T  20517317 ccctttccttcctcctctttgttttcatcacaaatctttcactagttttctcaaatga 20517374  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 9530542 - 9530598
Alignment:
Q  106 gtctctgtctttataagttactcttaaattagtcttcaactttattaatatttcaaa 162  Q
    |||||||||||| ||||| | ||| ||||||||||  ||||||||||||||||||||    
T  9530542 gtctctgtctttgtaagtcattctcaaattagtctctaactttattaatatttcaaa 9530598  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 516
Target Start/End: Complemental strand, 6869851 - 6869786
Alignment:
Q  451 cactcaccctttccttcctcctgtttgttttcactaccaatctttcactagctttctcaaatgatg 516  Q
    |||||||||||||||||||  | |||| |||||  |||| ||||||| |||||||||| |||||||    
T  6869851 cactcaccctttccttccttatatttgctttcatcaccactctttcattagctttctctaatgatg 6869786  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 8792967 - 8793027
Alignment:
Q  111 tgtctttataagttactcttaaattagtcttcaactttattaatatttcaaaatactcttt 171  Q
    ||||||| ||||| ||||| |||||||||| ||||| |||||||||||||||||| |||||    
T  8792967 tgtctttgtaagtcactctcaaattagtctccaactctattaatatttcaaaataatcttt 8793027  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 10028965 - 10028902
Alignment:
Q  99 caaaatagtctctgtctttataagttactcttaaattagtcttcaactttattaatatttcaaa 162  Q
    |||| |||||| ||||||| || || ||||| |||||||||||  |||||||||||||||||||    
T  10028965 caaattagtctttgtctttgtaggtcactctcaaattagtctttgactttattaatatttcaaa 10028902  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 21136582 - 21136670
Alignment:
Q  106 gtctctgtctttataagttactcttaaattagtcttcaactttattaatatttcaaaatactcttttatcttattcaaaagtttctcaat 195  Q
    ||||||||||||  |||| | ||| |||||||||||  ||| |||||||||||||||||| ||  |||||||  |||||||||| |||||    
T  21136582 gtctctgtcttttaaagtcattctcaaattagtctttgactctattaatatttcaaaatagtc-cttatctttgtcaaaagtttttcaat 21136670  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 29490667 - 29490604
Alignment:
Q  129 ttaaattagtcttcaactttattaatatttcaaaatactcttttatcttattcaaaagtttctca 193  Q
    ||||||||||||   ||||||||||||||| |||||| || ||||||||  ||||||||||||||    
T  29490667 ttaaattagtctctgactttattaatattttaaaataatc-tttatcttcgtcaaaagtttctca 29490604  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 36184524 - 36184570
Alignment:
Q  119 taagttactcttaaattagtcttcaactttattaatatttcaaaata 165  Q
    ||||| ||||| ||||||||||  |||||||||||||||||||||||    
T  36184524 taagtcactctcaaattagtctataactttattaatatttcaaaata 36184570  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 9900225 - 9900281
Alignment:
Q  138 tcttcaactttattaatatttcaaaatactcttttatcttattcaaaagtttctcaat 195  Q
    ||||||||| ||||||||||| |||||| | |||||||||  ||||||||||||||||    
T  9900225 tcttcaactctattaatattttaaaataat-ttttatctttgtcaaaagtttctcaat 9900281  T

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Target: scaffold0154 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 6314 - 6245
Alignment:
Q  96 tatcaaaatagtctctgtctttataagttactcttaaattagtcttcaactttattaatatttcaaaata 165  Q
    ||||||| | ||| |||| ||| ||||||| ||| |||||||||||  ||| ||||||||||||||||||    
T  6314 tatcaaattggtccctgtttttgtaagttattctcaaattagtctttgactctattaatatttcaaaata 6245  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 30935416 - 30935367
Alignment:
Q  113 tctttataagttactcttaaattagtcttcaactttattaatatttcaaa 162  Q
    ||||| ||||| ||||| |||||||||| | |||||||||||||||||||    
T  30935416 tctttgtaagtcactctcaaattagtctccgactttattaatatttcaaa 30935367  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 31178916 - 31178860
Alignment:
Q  106 gtctctgtctttataagttactcttaaattagtcttcaactttattaatatttcaaa 162  Q
    |||||||||||  ||||||| |||||||||||||| | | |||||||| ||||||||    
T  31178916 gtctctgtcttggtaagttattcttaaattagtctccgattttattaaaatttcaaa 31178860  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 17672952 - 17673004
Alignment:
Q  119 taagttactcttaaattagtcttcaactttattaatatttcaaaatactcttt 171  Q
    ||||| ||||| |||||||||| ||| | |||||||||||||||||| |||||    
T  17672952 taagtcactctcaaattagtctccaattctattaatatttcaaaatagtcttt 17673004  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 18561612 - 18561656
Alignment:
Q  111 tgtctttataagttactcttaaattagtcttcaactttattaata 155  Q
    ||||||| ||||| | ||| |||||||||||||||||||||||||    
T  18561612 tgtctttgtaagtcattctcaaattagtcttcaactttattaata 18561656  T

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