View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_50 (Length: 236)
Name: NF1852_low_50
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43341950 - 43341730
Alignment:
| Q |
1 |
agatgacatcaaccaaatgcattatttaaagtgtgtagtgaaagaaattctaaggttccatccagctactcctcttatggctccacgtgaaacaatatct |
100 |
Q |
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| T |
43341950 |
agatgacatcaaccaaatgcattatttaaagtgtgtagtgaaagaaattctaaggttccatccagctactcctcttatggctccacgtgaaacaatatct |
43341851 |
T |
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| Q |
101 |
agtgtgaatctaaaagggtacaatattcctgaaaaaacaatggtatatgtaaactcatgggcaatacaaagagaccctaaaaattgggaaaaccctgaag |
200 |
Q |
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| T |
43341850 |
agtgtgaatctaaaagggtacaatattcctgaaaaaacaatggtatatgtaaactcatgggcaatacaaagagaccctaaaaattgggaaaaccctgaag |
43341751 |
T |
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| Q |
201 |
agttcatgccagagagatttg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
43341750 |
agttcatgccagagagatttg |
43341730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 43359658 - 43359440
Alignment:
| Q |
3 |
atgacatcaaccaaatgcattatttaaagtgtgtagtgaaagaaattctaaggttccatccagctactcctcttatggctccacgtgaaacaatatctag |
102 |
Q |
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| T |
43359658 |
atgacatcaatcaaatgcattatttaaagtgtgtagtgaaagaaactatgagattacatccatctcttcctcttttggttcctcgagaaacaatatctag |
43359559 |
T |
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| Q |
103 |
tgtgaatctaaaagggtacaatattcctgaaaaaacaatggtatatgtaaactcatgggcaatacaaagagaccctaaaaattgggaaaaccctgaagag |
202 |
Q |
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| T |
43359558 |
cgtgaaactaaaaggatacgacattcctgcaaaaacaacggtatattttaatgcatggacaatacaaagagaccctaaatattgggaaaaccctgaagag |
43359459 |
T |
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| Q |
203 |
ttcatgccagagagatttg |
221 |
Q |
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| T |
43359458 |
ttcaagccagagaggtttg |
43359440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 221
Target Start/End: Original strand, 34417675 - 34417837
Alignment:
| Q |
59 |
catccagctactcctcttatggctccacgtgaaacaatatctagtgtgaatctaaaagggtacaatattcctgaaaaaacaatggtatatgtaaactcat |
158 |
Q |
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||||||||| |||||||| ||||||| | |||||| ||||||||| || || ||||| |||||||||| ||||||||||||||||| ||| ||| |
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| T |
34417675 |
catccagctgctcctcttttggctcctagaaaaacaacatctagtgttaaactcggtgggtatgatattcctgataaaacaatggtatatgtcaacacat |
34417774 |
T |
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| Q |
159 |
gggcaatacaaagagaccctaaaaattgggaaaaccctgaagagttcatgccagagagatttg |
221 |
Q |
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| T |
34417775 |
gggcaatccatagggaccctgaattttgggaaatgccagaagagtttctacctgagagatttg |
34417837 |
T |
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