View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1852_low_51 (Length: 236)

Name: NF1852_low_51
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1852_low_51
NF1852_low_51
[»] chr8 (5 HSPs)
chr8 (141-223)||(37371386-37371468)
chr8 (140-214)||(16822580-16822654)
chr8 (140-223)||(3554620-3554703)
chr8 (140-223)||(18608143-18608226)
chr8 (135-223)||(12101762-12101842)
[»] chr2 (11 HSPs)
chr2 (135-218)||(31554320-31554403)
chr2 (145-213)||(18921875-18921943)
chr2 (139-208)||(17640610-17640679)
chr2 (159-223)||(17822689-17822753)
chr2 (139-214)||(34467379-34467454)
chr2 (157-199)||(17827689-17827731)
chr2 (139-223)||(17873316-17873400)
chr2 (139-214)||(34463837-34463912)
chr2 (167-218)||(145796-145847)
chr2 (140-192)||(21137395-21137447)
chr2 (140-192)||(25044271-25044323)
[»] chr7 (10 HSPs)
chr7 (139-211)||(9246307-9246379)
chr7 (139-223)||(714567-714651)
chr7 (140-223)||(1464401-1464484)
chr7 (135-218)||(29693487-29693570)
chr7 (139-223)||(22701949-22702033)
chr7 (141-223)||(29540950-29541032)
chr7 (135-223)||(7813100-7813188)
chr7 (139-192)||(10267647-10267700)
chr7 (140-192)||(9302865-9302917)
chr7 (140-192)||(9307303-9307355)
[»] chr6 (1 HSPs)
chr6 (135-223)||(4965356-4965444)
[»] chr3 (8 HSPs)
chr3 (135-223)||(21967846-21967933)
chr3 (135-223)||(21990282-21990369)
chr3 (135-223)||(13475151-13475239)
chr3 (135-218)||(21082908-21082991)
chr3 (139-223)||(297871-297954)
chr3 (146-192)||(3420076-3420122)
chr3 (139-192)||(7106801-7106854)
chr3 (136-180)||(34493318-34493362)
[»] chr4 (10 HSPs)
chr4 (139-223)||(54983445-54983529)
chr4 (140-223)||(42381615-42381698)
chr4 (135-223)||(42398275-42398363)
chr4 (140-213)||(23693191-23693264)
chr4 (145-205)||(35267295-35267355)
chr4 (146-206)||(33359943-33360003)
chr4 (172-216)||(19545726-19545770)
chr4 (140-192)||(9296693-9296745)
chr4 (140-192)||(44672053-44672105)
chr4 (140-192)||(44673591-44673643)
[»] chr1 (5 HSPs)
chr1 (135-223)||(32591035-32591127)
chr1 (139-218)||(15475181-15475260)
chr1 (139-223)||(44065144-44065228)
chr1 (145-217)||(48420654-48420726)
chr1 (135-172)||(33475988-33476025)
[»] scaffold1993 (1 HSPs)
scaffold1993 (140-218)||(263-341)
[»] chr5 (3 HSPs)
chr5 (139-212)||(30840931-30841004)
chr5 (139-206)||(29531184-29531251)
chr5 (140-192)||(42772462-42772514)
[»] scaffold0092 (1 HSPs)
scaffold0092 (145-207)||(8828-8890)
[»] scaffold0990 (1 HSPs)
scaffold0990 (139-192)||(2411-2464)


Alignment Details
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 37371386 - 37371468
Alignment:
Q  141 aaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||    
T  37371386 aaaccaaaatacgtcgatttgataaataatttcgttatatgttttgacaataatttatagataaatcgatgtacgaataattt 37371468  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 16822580 - 16822654
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtac 214  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||    
T  16822580 caaaccaaaataggtcgagttgataaataattttgttatatgctttgacaataatttgtagatacatcgacgtac 16822654  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 3554620 - 3554703
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    |||||||||||  |||||||||||||||||||| |||||||  |||||||||||| |||||||||||||| |||||||| ||||    
T  3554620 caaaccaaaatttgtcgagttgataaataatttcgttatatactttgacaataatttgtagataaatcgacgtacgaataattt 3554703  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 18608226 - 18608143
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||||||  ||||| ||||||||||||| |||||||  |||||||||||| ||||||||||| ||||||| ||| ||||    
T  18608226 caaaccaaaatagttcgagatgataaataatttcgttatatactttgacaataatttgtagataaattgatgtactaataattt 18608143  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 12101762 - 12101842
Alignment:
Q  135 acaaacaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||||||||| | || ||||||||||   ||||||||||||||||||||||      |||||||||||||||||||||| ||||    
T  12101762 acaaacaaaccaaaaaaagttgagttgataat--attttgttatatgttttgacaa------gtagataaatcgatgtacgaataattt 12101842  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 31554403 - 31554320
Alignment:
Q  135 acaaacaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaat 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||||||||  |||||||||||    
T  31554403 acaaacaaaccaaaatatgtcgagttgataaataattttgttatttgttttgacaataatttatagataaactgatgtacgaat 31554320  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 18921943 - 18921875
Alignment:
Q  145 caaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgta 213  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||| | |||||||||| |||||    
T  18921943 caaaatacgtcgggttgataaataattttgttatatgttttgataataatttatagataaatcaatgta 18921875  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 17640679 - 17640610
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcg 208  Q
    ||||||||||||| |  ||||||||||||||||| ||||||| ||| ||||||||| || ||||||||||    
T  17640679 acaaaccaaaatatgctgagttgataaataatttcgttatatatttagacaataatttgaagataaatcg 17640610  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 17822689 - 17822753
Alignment:
Q  159 ttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||| |||| |||||||| |||||||||||| ||||||||||| ||||||| ||| ||||    
T  17822689 ttgataaattatttcgttatatgctttgacaataatttgtagataaatagatgtacaaataattt 17822753  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 34467454 - 34467379
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtac 214  Q
    ||||| ||||||| ||||||||||||||  |||| || ||||||||| |||| ||| ||||||||||| |||||||    
T  34467454 acaaatcaaaatatgtcgagttgataaaatatttcgtcatatgtttttacaagaatttgtagataaattgatgtac 34467379  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 17827689 - 17827731
Alignment:
Q  157 agttgataaataattttgttatatgttttgacaataatctgta 199  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  17827689 agttgataaataatttcgttatatgttttgacaataatttgta 17827731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 17873316 - 17873400
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    |||||||||||||  || |||||||| ||||||| |||||||| |  ||||||||| |||| |||||||||| ||| ||| ||||    
T  17873316 acaaaccaaaatatatcaagttgatagataatttcgttatatgctccgacaataatttgtatataaatcgatttacaaataattt 17873400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 34463912 - 34463837
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaa-taattttgttatatgttttgacaataatctgtagataaatcgatgtac 214  Q
    |||||| |||||| |||||||||||||| ||||||| |||||||||||  ||| ||| |||||||||||| ||||||    
T  34463912 acaaacaaaaatatgtcgagttgataaaataatttt-ttatatgtttttgcaaaaatttgtagataaatctatgtac 34463837  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 145847 - 145796
Alignment:
Q  167 taattttgttatatgttttgacaataatctgtagataaatcgatgtacgaat 218  Q
    |||||| |||||||||||| |||||||| || |||||||||||| |||||||    
T  145847 taatttcgttatatgttttaacaataatttgcagataaatcgatatacgaat 145796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 21137447 - 21137395
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaata 192  Q
    ||||| || |||||| ||||| | |||||||||||||||||| ||||||||||    
T  21137447 caaactaatatacgttgagttaaaaaataattttgttatatgctttgacaata 21137395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 25044323 - 25044271
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaata 192  Q
    ||||| |||||| || ||||| ||||||||||||||||||||  |||||||||    
T  25044323 caaactaaaatatgttgagttcataaataattttgttatatgccttgacaata 25044271  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 9246307 - 9246379
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatg 211  Q
    ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  9246307 acaaaccaaaatatgtcgagttaataaataattttgttatatgctttgacaataatttgtagataaatcgatg 9246379  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 714651 - 714567
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||||||||  |||||||||||||||||| || |||||||||||||| ||| | |||||||||||||||| |||| ||||    
T  714651 acaaaccaaaatacaccgagttgataaataatttcgtaatatgttttgacaacaatttttagataaatcgatgtatgaataattt 714567  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 1464401 - 1464484
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    |||||||||||| ||||||||||||||| ||||  ||||||| |||||||||||| ||||||||||| ||||||| ||| ||||    
T  1464401 caaaccaaaatatgtcgagttgataaattatttcattatatgctttgacaataatttgtagataaattgatgtacaaataattt 1464484  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 29693487 - 29693570
Alignment:
Q  135 acaaacaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaat 218  Q
    ||||||||| | ||||| |||||||||||||||||||| || ||||| ||||| |||||| | ||||||||| |||||| ||||    
T  29693487 acaaacaaatcgaaatatgtcgagttgataaataatttcgtcatatgctttgataataatttatagataaattgatgtatgaat 29693570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 22701949 - 22702033
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||| |||| | ||||| ||||||||||| |||||||  |||||||| ||| |||| |||||||||||||| ||| ||||    
T  22701949 acaaaccaatatacattgagttaataaataatttcgttatatcctttgacaagaatttgtaaataaatcgatgtacaaataattt 22702033  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 29541032 - 29540950
Alignment:
Q  141 aaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||||| | | ||||||||||||||||  ||||||  |||||||||||| |||||||||  |||||||| ||| ||||    
T  29541032 aaaccaaaatatgacaagttgataaataatttcattatatactttgacaataatttgtagataacccgatgtacaaataattt 29540950  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 7813100 - 7813188
Alignment:
Q  135 acaaacaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    |||| ||||| |||||| ||||||||| |||||||||| |||| ||| |||||||||||| | || | ||||  |||||||||| ||||    
T  7813100 acaagcaaactaaaatatgtcgagttgttaaataatttcgttagatgctttgacaataatttctacaaaaattcatgtacgaataattt 7813188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 10267700 - 10267647
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaata 192  Q
    |||||| |||||| || ||||| ||||||||||||||||||||  |||||||||    
T  10267700 acaaactaaaatatgttgagttcataaataattttgttatatgacttgacaata 10267647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 9302865 - 9302917
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaata 192  Q
    ||||| |||||| || ||||| ||||||||||||||||||||  |||||||||    
T  9302865 caaacaaaaatatgttgagttcataaataattttgttatatgccttgacaata 9302917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 9307303 - 9307355
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaata 192  Q
    ||||| |||||| || ||||| ||||||||||||||||||||  |||||||||    
T  9307303 caaacaaaaatatgttgagttcataaataattttgttatatgccttgacaata 9307355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 4965444 - 4965356
Alignment:
Q  135 acaaacaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    |||| |||||||||||| || |||||||||||||||||||||||||  |||||||||||| |||||||||||||||| |||||| ||||    
T  4965444 acaagcaaaccaaaatatgttgagttgataaataattttgttatatactttgacaataatttgtagataaatcgatgcacgaataattt 4965356  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 21967846 - 21967933
Alignment:
Q  135 acaaacaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||    
T  21967846 acaaacaaaccaaaatacgccaagttgataagtaattttgttatatg-tttgacaataatttgtagataaattgatgtacgaataattt 21967933  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 21990282 - 21990369
Alignment:
Q  135 acaaacaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||    
T  21990282 acaaacaaaccaaaatacgccaagttgataagtaattttgttatatg-tttgacaataatttgtagataaattgatgtacgaataattt 21990369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 13475239 - 13475151
Alignment:
Q  135 acaaacaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    |||||||||||||| || ||||||||||||| |||||| |||||||  ||| |||||||| ||||||||||||||||| ||||| ||||    
T  13475239 acaaacaaaccaaattatgtcgagttgataagtaatttcgttatatactttaacaataatttgtagataaatcgatgtgcgaataattt 13475151  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 21082908 - 21082991
Alignment:
Q  135 acaaacaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaat 218  Q
    ||||| |||||||||||||  || ||||||||||||||||||||||| | ||||||||||  ||||||||||||||||| ||||    
T  21082908 acaaataaaccaaaatacgcagaattgataaataattttgttatatgctatgacaataattcgtagataaatcgatgtatgaat 21082991  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 297871 - 297954
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||| ||||||| |||| | || || ||||||||||||||| ||||    
T  297871 acaaaccaaaatatgtcgatttgatgaataattttgttatatgctttgacattaatttatacat-aatcgatgtacgaataattt 297954  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 3420122 - 3420076
Alignment:
Q  146 aaaatacgtcgagttgataaataattttgttatatgttttgacaata 192  Q
    |||||| || ||||| ||||||||||||||||||||| |||||||||    
T  3420122 aaaatatgttgagttcataaataattttgttatatgtcttgacaata 3420076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 7106854 - 7106801
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaata 192  Q
    |||||| |||||| || ||||| ||||||||||||||||||||  |||||||||    
T  7106854 acaaactaaaatatgttgagttcataaataattttgttatatgccttgacaata 7106801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 34493318 - 34493362
Alignment:
Q  136 caaacaaaccaaaatacgtcgagttgataaataattttgttatat 180  Q
    ||||||||| |||||| || ||||| |||||||||||||||||||    
T  34493318 caaacaaactaaaatatgttgagttcataaataattttgttatat 34493362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 54983445 - 54983529
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||| |||||| | ||||||||||||| ||||||| ||||    
T  54983445 acaaaccaaaatacatcgagtcgataaataattttgttatatgctttgataataatttttagataaatcgatatacgaataattt 54983529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 42381615 - 42381698
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||  |||||| ||| ||||    
T  42381615 caaaccaaagtacgccgagttgataaataattttgttatatgctttgacaataatttgtagataaattaatgtacaaataattt 42381698  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 42398363 - 42398275
Alignment:
Q  135 acaaacaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||||||||||| | ||||||||||||||||||  ||||||| ||||||| |||| ||||||||||||||| ||| ||| ||||    
T  42398363 acaaacaaaccaaaatatgccgagttgataaataatttcattatatgctttgacactaatttgtagataaatcgatctacaaatcattt 42398275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 23693264 - 23693191
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgta 213  Q
    ||||||| |||| || |||||||||||  ||||||||||||| |||||||||||| ||||||||||||||||||    
T  23693264 caaaccagaatatgtggagttgataaactattttgttatatgctttgacaataatttgtagataaatcgatgta 23693191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 35267295 - 35267355
Alignment:
Q  145 caaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaa 205  Q
    ||||||| |||||||||||||||||||||| |||||| ||| |||||||| ||||||||||    
T  35267295 caaaatatgtcgagttgataaataattttgctatatgctttaacaataatttgtagataaa 35267355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 33359943 - 33360003
Alignment:
Q  146 aaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaat 206  Q
    |||||||||||||||||||||||| |  ||| |||||||| |||||||| |||||||||||    
T  33359943 aaaatacgtcgagttgataaataaatccgttttatgttttaacaataatatgtagataaat 33360003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 19545726 - 19545770
Alignment:
Q  172 ttgttatatgttttgacaataatctgtagataaatcgatgtacga 216  Q
    |||||||||||||||||||| || ||||||||||||||| |||||    
T  19545726 ttgttatatgttttgacaattatttgtagataaatcgatatacga 19545770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 9296693 - 9296745
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaata 192  Q
    ||||| |||||| || ||||| |||||||| |||||||||||| |||||||||    
T  9296693 caaactaaaatatgttgagttcataaataagtttgttatatgtcttgacaata 9296745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 44672105 - 44672053
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaata 192  Q
    ||||| |||||| || ||||| |||||||| |||||||||||| |||||||||    
T  44672105 caaactaaaatatgttgagttcataaataactttgttatatgtcttgacaata 44672053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 44673643 - 44673591
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaata 192  Q
    ||||| |||||| || ||||| |||||||| |||||||||||| |||||||||    
T  44673643 caaactaaaatatgttgagttcataaataactttgttatatgtcttgacaata 44673591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 32591127 - 32591035
Alignment:
Q  135 acaaacaaaccaaaatacgtcgagttgataaataattttgttatatgttttgaca----ataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||| ||||||||||| ||||||||||||||||  |||||||||||||||    ||||| ||||||||| ||||||||||||| ||||    
T  32591127 acaaacaaatcaaaatacgtcaagttgataaataatttcattatatgttttgacaatatataatttgtagataagtcgatgtacgaataattt 32591035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 15475181 - 15475260
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaat 218  Q
    |||||| |||||| | ||||||||||||||||||||| ||| |||||||||||||| | ||||||||| ||| |||||||    
T  15475181 acaaactaaaatatgccgagttgataaataattttgtgataagttttgacaataatttatagataaattgatatacgaat 15475260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 44065228 - 44065144
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaattattt 223  Q
    ||||||||||||||| |||||||||| ||||||| | |||| | || | ||||||| ||||||||||||||| ||||||| ||||    
T  44065228 acaaaccaaaatacgccgagttgatagataatttcggtatacgcttcgtcaataatttgtagataaatcgatttacgaataattt 44065144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 48420654 - 48420726
Alignment:
Q  145 caaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaa 217  Q
    ||||||||||| | ||||||||||||||||||||||  ||| | |||||| | ||||||||||||||||||||    
T  48420654 caaaatacgtcaaattgataaataattttgttatataatttaataataatttatagataaatcgatgtacgaa 48420726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 33475988 - 33476025
Alignment:
Q  135 acaaacaaaccaaaatacgtcgagttgataaataattt 172  Q
    |||| |||||||||||||||||||||||||||||||||    
T  33475988 acaagcaaaccaaaatacgtcgagttgataaataattt 33476025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 341 - 263
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgtacgaat 218  Q
    |||| ||||||| |||||||| ||||||||||| |||||||  |||||||||||| |||||||||||||||| ||||||    
T  341 caaatcaaaatatgtcgagttaataaataatttcgttatatagtttgacaataatttgtagataaatcgatgaacgaat 263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 30841004 - 30840931
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatcgatgt 212  Q
    |||||||||||||| || |||||||||||||||||||||||||||| ||||||||| | ||  |||||||||||    
T  30841004 acaaaccaaaatacatcaagttgataaataattttgttatatgtttcgacaataatttatacgtaaatcgatgt 30840931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 29531251 - 29531184
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaat 206  Q
    |||||| ||||||| |  |||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  29531251 acaaactaaaatacattaagttgataaataattttgttatatgtttcgacaataatttatagataaat 29531184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 42772514 - 42772462
Alignment:
Q  140 caaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaata 192  Q
    ||||| |||||| || ||||| ||||||||||| ||||||||| |||||||||    
T  42772514 caaactaaaatatgttgagttcataaataatttagttatatgtcttgacaata 42772462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 8828 - 8890
Alignment:
Q  145 caaaatacgtcgagttgataaataattttgttatatgttttgacaataatctgtagataaatc 207  Q
    ||||||||||| | | |||||||||||| |||||||| |||||||||||| ||||||||||||    
T  8828 caaaatacgtcaaatagataaataatttcgttatatgctttgacaataatttgtagataaatc 8890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 2411 - 2464
Alignment:
Q  139 acaaaccaaaatacgtcgagttgataaataattttgttatatgttttgacaata 192  Q
    |||||| |||||| || ||||| | ||||||||||||||||||| |||||||||    
T  2411 acaaactaaaatatgttgagttcaaaaataattttgttatatgtcttgacaata 2464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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