View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_54 (Length: 217)
Name: NF1852_low_54
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 4653373 - 4653189
Alignment:
| Q |
17 |
cagagagcaactaaccacacaaaatatcgtgatgtcatattgaatggaatccagattttaaaagaaagtgactacaacgacaatcttgcaggatcaataa |
116 |
Q |
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| T |
4653373 |
cagagagcaactaaccacacaaaataccgcgatgtcatattgaatggaatccagattttaaaagaaagtgactacaacgacaatctcgcaggatcaataa |
4653274 |
T |
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| Q |
117 |
caaaatccattgatcaggatttttcaacccaatcatcnnnnnnnnttaagatcaccatagcgattgttgcgacgattatagtttc |
201 |
Q |
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| T |
4653273 |
caaaatccattgatcaggaattttcaacccaatcaccaaaaaaaattaagatcaccatagcgattgttgcgacgattgtagtttc |
4653189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 4666740 - 4666671
Alignment:
| Q |
59 |
aatggaatccagattttaaaagaaagtgactacaacgacaatcttgcaggatcaataacaaaatccattg |
128 |
Q |
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| T |
4666740 |
aatggaatcgagattttaaaaataagtgacaaaaataacaatctcgcaggaccaatatcaaaatccattg |
4666671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 18926009 - 18926104
Alignment:
| Q |
36 |
caaaatatcgtgatgtcatattgaatggaatccagattttaaaagaaagtgactacaacgacaatcttgcaggatcaataacaaaatccattgatc |
131 |
Q |
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| T |
18926009 |
caaaataccgtaatgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataacaatctcgcaggatcaatatcaaaatccaatgatc |
18926104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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