View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_56 (Length: 213)
Name: NF1852_low_56
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 20630830 - 20631010
Alignment:
| Q |
17 |
gaggagtggatcattgattgaagtggtgatacgatatgactcctcgagtaagacattgactgttatgacatctgacacccacgagtttaccgaatttcat |
116 |
Q |
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| T |
20630830 |
gaggagtgaatcattgattgaagtggtgatacgatatgactcctcgagtaagacattgactgttatgacatctgacacccacgagtttaccgaatttcat |
20630929 |
T |
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| Q |
117 |
cgagtcattaatttgaaagatgcactcccggggacggtaaaagttggtctatctacaggacagatggaaggacgtgaaaca |
197 |
Q |
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| T |
20630930 |
cgagtcattaatttgaaagatgcactcccggggatggtaaaagttggtctatctacaggacagatggaaggacgtgaaaca |
20631010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 20636870 - 20637050
Alignment:
| Q |
17 |
gaggagtggatcattgattgaagtggtgatacgatatgactcctcgagtaagacattgactgttatgacatctgacacccacgagtttaccgaatttcat |
116 |
Q |
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||||||||||||||||||| ||||| | |||||| |||||| ||| || | ||||||||||||| |||| ||||||||||||| ||| |||||| || |
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| T |
20636870 |
gaggagtggatcattgattaaagtgataatacgacatgacttctcaagaaggacattgactgttgtgacgactgacacccacgatgttaacgaattatat |
20636969 |
T |
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| Q |
117 |
cgagtcattaatttgaaagatgcactcccggggacggtaaaagttggtctatctacaggacagatggaaggacgtgaaaca |
197 |
Q |
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| T |
20636970 |
cgagtcattaatttgaatgatattctcccgcagacggtaaaaattggtatatctacagcacaaatggaaggtcgtcaaaca |
20637050 |
T |
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