View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1852_low_8 (Length: 488)

Name: NF1852_low_8
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1852_low_8
NF1852_low_8
[»] chr2 (2 HSPs)
chr2 (12-475)||(36346740-36347203)
chr2 (380-441)||(40216531-40216592)
[»] chr5 (3 HSPs)
chr5 (377-436)||(12248400-12248459)
chr5 (380-441)||(8076377-8076438)
chr5 (381-436)||(43100208-43100263)
[»] chr4 (3 HSPs)
chr4 (377-436)||(14149956-14150015)
chr4 (381-441)||(48525448-48525508)
chr4 (380-427)||(40947103-40947150)
[»] chr8 (2 HSPs)
chr8 (379-441)||(35200678-35200740)
chr8 (381-441)||(11904975-11905035)
[»] chr6 (2 HSPs)
chr6 (381-436)||(16718124-16718179)
chr6 (379-441)||(12748334-12748396)
[»] chr7 (2 HSPs)
chr7 (379-441)||(38349457-38349519)
chr7 (380-441)||(28713799-28713860)
[»] chr1 (5 HSPs)
chr1 (380-441)||(47571562-47571623)
chr1 (382-441)||(29731310-29731369)
chr1 (377-431)||(44797463-44797517)
chr1 (382-436)||(48489576-48489630)
chr1 (377-429)||(19989371-19989422)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 475
Target Start/End: Original strand, 36346740 - 36347203
Alignment:
Q  12 agagagcaagacaattaaagaaaacacttatttgtttcattgatttgatcatgatcaaacatttgtcaaattttctcaagaatgccnnnnnnnttggtat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||       ||||| |    
T  36346740 agagagcaagacaattaaagaaaacacttatttgtttcattgatttgatcatgatcaaacatatgtcaaattttctcaagaacgccaaaaaaattggttt 36346839  T
Q  112 tattcttctttcatgatattagcctgattactactttagtttctatcataaagataatgaatagttaagcaatcaaaattcattctgtttagtcgaattg 211  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36346840 tattcttctttcatgatattagcctgattgatactttagtttctatcataaagataatgaatagttaagcaatcaaaattcattctttttagtcgaattg 36346939  T
Q  212 acattttttagtttcattcataaagaaaattaatagtcaactttattcttattttttgttaagcagttacatatcgttattggcattttttatttatccn 311  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36346940 acattttttagtttcattcgtaaagaaaattaatagtcaactttattcttattttttgttaagcagttacatatcgttattggcattttttatttatcca 36347039  T
Q  312 nnnnnnnnntggatagttgagaaaaaatttagccgatttattttcaacannnnnnngtattttccaaaaggataatgttttatggacactcttttctcta 411  Q
              ||||||||||||||||| ||| ||||| |||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||    
T  36347040 aaaaaaaaaaggatagttgagaaaaaaattaaccgatgtattttcaacatttttttgtatttttcaaaaggataatgttttatggacactcttttctcta 36347139  T
Q  412 tataaacattgtaccacttccatgtaagagacacaaaatgtgagttctttgtgtatgtggaaac 475  Q
    |||||||||| |||||   |||||||||| ||||||||| ||| ||||||||||||||||||||    
T  36347140 tataaacattataccatccccatgtaagatacacaaaatatgaattctttgtgtatgtggaaac 36347203  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 40216592 - 40216531
Alignment:
Q  380 aggataatgttttatggacactcttttctctatataaacattgtaccacttccatgtaagag 441  Q
    |||||||||||| ||| |||| |||| ||||||| | |||||||||||||||||||| ||||    
T  40216592 aggataatgtttcatgaacaccctttcctctatacacacattgtaccacttccatgtgagag 40216531  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 436
Target Start/End: Complemental strand, 12248459 - 12248400
Alignment:
Q  377 aaaaggataatgttttatggacactcttttctctatataaacattgtaccacttccatgt 436  Q
    ||||||||||||||| ||| |||| |||||||||||| | ||||||||||||||||||||    
T  12248459 aaaaggataatgtttcatgaacacccttttctctatacacacattgtaccacttccatgt 12248400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 8076438 - 8076377
Alignment:
Q  380 aggataatgttttatggacactcttttctctatataaacattgtaccacttccatgtaagag 441  Q
    |||||||||||| ||| |||| |||||||||||| | |||||||||||||||||||| ||||    
T  8076438 aggataatgtttcatgaacacccttttctctatacatacattgtaccacttccatgtgagag 8076377  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 43100208 - 43100263
Alignment:
Q  381 ggataatgttttatggacactcttttctctatataaacattgtaccacttccatgt 436  Q
    ||||||||||| ||| |||| |||||||||||| | |||||||||||||| |||||    
T  43100208 ggataatgtttcatgaacacccttttctctatacacacattgtaccactttcatgt 43100263  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 436
Target Start/End: Original strand, 14149956 - 14150015
Alignment:
Q  377 aaaaggataatgttttatggacactcttttctctatataaacattgtaccacttccatgt 436  Q
    ||||||||||||||| ||| |||| |||||||||||| | ||||||||||||||||||||    
T  14149956 aaaaggataatgtttcatgaacacccttttctctatacacacattgtaccacttccatgt 14150015  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 48525508 - 48525448
Alignment:
Q  381 ggataatgttttatggacactcttttctctatataaacattgtaccacttccatgtaagag 441  Q
    ||||||||||| ||| |||| |||| ||||||| | |||||||||||||||||||| ||||    
T  48525508 ggataatgtttcatgaacaccctttcctctatacacacattgtaccacttccatgtgagag 48525448  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 40947103 - 40947150
Alignment:
Q  380 aggataatgttttatggacactcttttctctatataaacattgtacca 427  Q
    ||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  40947103 aggataatgttttatggacactctttttttcatataaatattgtacca 40947150  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 441
Target Start/End: Complemental strand, 35200740 - 35200678
Alignment:
Q  379 aaggataatgttttatggacactcttttctctatataaacattgtaccacttccatgtaagag 441  Q
    ||||||||||||| ||| |||| |||||||||||| | |||||||||||||||||||| ||||    
T  35200740 aaggataatgtttgatgaacacccttttctctatacacacattgtaccacttccatgtgagag 35200678  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 11905035 - 11904975
Alignment:
Q  381 ggataatgttttatggacactcttttctctatataaacattgtaccacttccatgtaagag 441  Q
    ||||||||||| ||| |||| |||||||||||| | |||||||||||||||||||| ||||    
T  11905035 ggataatgtttcatgaacacccttttctctatacacacattgtaccacttccatgtgagag 11904975  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 16718179 - 16718124
Alignment:
Q  381 ggataatgttttatggacactcttttctctatataaacattgtaccacttccatgt 436  Q
    ||||||||||| ||| |||| |||||||||||| | ||||||||||||||||||||    
T  16718179 ggataatgtttcatgaacacccttttctctatacacacattgtaccacttccatgt 16718124  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 441
Target Start/End: Complemental strand, 12748396 - 12748334
Alignment:
Q  379 aaggataatgttttatggacactcttttctctatataaacattgtaccacttccatgtaagag 441  Q
    ||||||||||||| ||  |||| ||||||| |||| | |||||||||||||||||||| ||||    
T  12748396 aaggataatgtttcataaacacccttttctttatacacacattgtaccacttccatgtgagag 12748334  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 38349457 - 38349519
Alignment:
Q  379 aaggataatgttttatggacactcttttctctatataaacattgtaccacttccatgtaagag 441  Q
    ||||||||||||| ||| |||| |||| ||||||| | |||||||||||||||||||| ||||    
T  38349457 aaggataatgtttcatgaacaccctttcctctatacacacattgtaccacttccatgtgagag 38349519  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 28713860 - 28713799
Alignment:
Q  380 aggataatgttttatggacactcttttctctatataaacattgtaccacttccatgtaagag 441  Q
    |||||||||||| ||| |||| |||||||||||| | | |||||||||||| ||||| ||||    
T  28713860 aggataatgtttcatgaacacccttttctctatacacatattgtaccactttcatgtgagag 28713799  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 47571562 - 47571623
Alignment:
Q  380 aggataatgttttatggacactcttttctctatataaacattgtaccacttccatgtaagag 441  Q
    |||||||||||| ||| |||| |||| ||||||| | |||||||||||||||||||| ||||    
T  47571562 aggataatgtttcatgaacaccctttcctctatacacacattgtaccacttccatgtgagag 47571623  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 441
Target Start/End: Complemental strand, 29731369 - 29731310
Alignment:
Q  382 gataatgttttatggacactcttttctctatataaacattgtaccacttccatgtaagag 441  Q
    |||||||||| ||| |||| |||||||||||| | |||||||| ||||||||||| ||||    
T  29731369 gataatgtttcatgaacacccttttctctatacacacattgtatcacttccatgtgagag 29731310  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 44797463 - 44797517
Alignment:
Q  377 aaaaggataatgttttatggacactcttttctctatataaacattgtaccacttc 431  Q
    ||||||||||||||| ||| |||| ||||| |||||| | |||||||||||||||    
T  44797463 aaaaggataatgtttcatgtacacacttttttctatacacacattgtaccacttc 44797517  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 48489630 - 48489576
Alignment:
Q  382 gataatgttttatggacactcttttctctatataaacattgtaccacttccatgt 436  Q
    |||||||||| ||| ||||  ||||||||||| | ||||||||||||||||||||    
T  48489630 gataatgtttcatgaacaccattttctctatacatacattgtaccacttccatgt 48489576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 19989422 - 19989371
Alignment:
Q  377 aaaaggataatgttttatggacactcttttctctatataaacattgtaccact 429  Q
    ||||||||||||||| || |||||||||||||| ||| | |||||||||||||    
T  19989422 aaaaggataatgtttcatagacactcttttctc-atacacacattgtaccact 19989371  T

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