View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_low_9 (Length: 482)
Name: NF1852_low_9
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 475
Target Start/End: Complemental strand, 21602850 - 21602398
Alignment:
| Q |
16 |
caaattcattggatggaacttgcctttgctcttctgcattctccgcttcctttacatgtacatnnnnnnnnnnnnnnnntattcagtaagtggnnnnnnn |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |
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| T |
21602850 |
caaattcattggatggaacttgcctttgctcttctgcattctccgcttcctttacgtgtacataaagaaaaa-------tattctgtaagtggttttttt |
21602758 |
T |
|
| Q |
116 |
natgcaacagaagaacaatatttattcgcagtgtgacataactaacattcaggcaagcaaaattttcatcaaaactcaaatttgnnnnnnntaagaaact |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21602757 |
tatgcaacagaagaacaatatttattcgcagtgtgacataactaacattcaggcaagcaaaattttcatcaaaactcaaatttgaaaaaaataagaaact |
21602658 |
T |
|
| Q |
216 |
tgattaaactagagagtgttatggagagctgaaaacatgatactgaatgtgttcacctgaaacaagctagtgggaatgtttcttctcctccttgattttc |
315 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21602657 |
tgattaaactagaaagtgttatggagagctgaaaacatgatagtgaatgtgttcacctgaaacaagctagcgggaatgtttcttctcctccttgattttc |
21602558 |
T |
|
| Q |
316 |
ccggagaaatacttgaaagaatttgaacaacctcgctcattgttggtcgagtgtccggatccagaagcaagcactcctttgctaggtatgccattatatg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21602557 |
ccggagaaatacttgaaagaatttgaacaacctcgctcattgttggtcgagtgtctggatccagaagcaagcactcctttgctaggtatgccattatatg |
21602458 |
T |
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| Q |
416 |
cacctcttcttctaggaagtttcctttcaattgtggatcaactaactccgatattcttcg |
475 |
Q |
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| T |
21602457 |
cacctcttcttctaggaagtttccttccaattgtggatcaactaactccgatattattcg |
21602398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 319 - 455
Target Start/End: Original strand, 40522140 - 40522276
Alignment:
| Q |
319 |
gagaaatacttgaaagaatttgaacaacctcgctcattgttggtcgagtgtccggatccagaagcaagcactcctttgctaggtatgccattatatgcac |
418 |
Q |
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|||||||||||||||||||| |||||| || ||||| ||||||| | | || ||||||| | ||||| ||||||||||||| ||||||||||||||| |
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| T |
40522140 |
gagaaatacttgaaagaattaaaacaacttcactcatagttggtctattatcaggatccaacaataagcattcctttgctaggtttgccattatatgcac |
40522239 |
T |
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| Q |
419 |
ctcttcttctaggaagtttcctttcaattgtggatca |
455 |
Q |
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||| |||||| |||||||||||||||||||||||||| |
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| T |
40522240 |
ctcatcttctgggaagtttcctttcaattgtggatca |
40522276 |
T |
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