View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18530_high_1 (Length: 522)

Name: NF18530_high_1
Description: NF18530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18530_high_1
NF18530_high_1
[»] chr5 (5 HSPs)
chr5 (1-513)||(15401928-15402440)
chr5 (107-321)||(15400412-15400620)
chr5 (115-189)||(27998605-27998681)
chr5 (335-381)||(15400123-15400169)
chr5 (1-37)||(41377751-41377787)
[»] chr4 (3 HSPs)
chr4 (115-189)||(47147537-47147611)
chr4 (115-157)||(49686891-49686933)
chr4 (115-189)||(40018231-40018307)
[»] chr8 (1 HSPs)
chr8 (115-189)||(23023389-23023465)
[»] chr2 (2 HSPs)
chr2 (115-189)||(8197583-8197659)
chr2 (115-189)||(8202343-8202419)
[»] chr3 (2 HSPs)
chr3 (112-156)||(5852343-5852387)
chr3 (115-180)||(46367429-46367496)
[»] chr7 (1 HSPs)
chr7 (115-189)||(40138990-40139066)
[»] chr1 (1 HSPs)
chr1 (115-156)||(39525964-39526005)


Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 15402440 - 15401928
Alignment:
Q  1 ctctgttttgtttgcttgtttcctctgcttttcctctcaactctatcaacaacctacgtgttacgaccctcgtgtttacgatcctacttaaaaatccaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15402440 ctctgttttgtttgcttgtttcctctgcttttcctctcaactctatcaacaacctacgtgttacgaccctcgtgtatacgatcctacttaaaaatccaaa 15402341  T
Q  101 cctgagtacatctgcatggatcaaacgacgtcataatattccatcatttatcatatctatccaatttattaatctctagacctttcttatatagttttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402340 cctgagtacatctgcatggatcaaacgacgtcataatattccatcatttatcatatctatccaatttattaatctctagacctttcttatatagttttct 15402241  T
Q  201 aagtcttcctgtacctcgagcgatttgactactaacctccatctgatccccactccaaaatcaaatactcctagagtttagagtaaattactaaaaaaca 300  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15402240 aagtcttcctgtacctcgagcgatttgactactaacctccgtctgatctccactccaaaatcaaatagtcctagagtttagagtaaattactaaaaaaca 15402141  T
Q  301 ataacaaagtaaattgtattaataaaggtgtcagaccaggttttgataaaagagaattcattgcaaattgcaatgtgaatacgattgagtctgcgtcagc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402140 ataacaaagtaaattgtattaataaaggtgtcagaccaggttttgataaaagagaattcattgcaaattgcaatgtgaatacgattgagtctgcgtcagc 15402041  T
Q  401 tgcatttgatcgtgattctcctcaatgtcaagaaccgtcacatgacttccaccaatttaaaaccttggtgctaagtgttcattattcataaaacttgcgt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402040 tgcatttgatcgtgattctcctcaatgtcaagaaccgtcacatgacttccaccaatttaaaaccttggtgctaagtgttcattattcataaaacttgcgt 15401941  T
Q  501 gttacatattctt 513  Q
    ||||||| |||||    
T  15401940 gttacattttctt 15401928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 107 - 321
Target Start/End: Complemental strand, 15400620 - 15400412
Alignment:
Q  107 tacatctgcatggatcaaacgacgtcataatattccatcatttatcatatctatccaatttattaatctctagacctttcttatatagttttctaagtct 206  Q
    ||||| || |||||||||||||||||||||||| | ||||| ||||| ||||||| |||||||||||||||| ||| || |||||  ||||| |||||||    
T  15400620 tacatttgtatggatcaaacgacgtcataatatcctatcatatatcacatctatcaaatttattaatctctaaaccctttttata--gttttttaagtct 15400523  T
Q  207 tcctgtacctcgagcgatttgactactaacctccatctgatccccactccaaaatcaaatactcctagagtttagagtaaattactaa--aaaacaataa 304  Q
    || | ||||||||||||||||||| ||||||||||||| ||| || ||| ||||||| ||||||      |||| |||||||||||||  ||||||||||    
T  15400522 tcatctacctcgagcgatttgactgctaacctccatctaatctccgctcgaaaatcacatactc------tttatagtaaattactaaagaaaacaataa 15400429  T
Q  305 caaagtaaattgtatta 321  Q
    ||||||||||| |||||    
T  15400428 caaagtaaattttatta 15400412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 27998681 - 27998605
Alignment:
Q  115 catggatcaaacgacgtcataatattccatcatttatcatat--ctatccaatttattaatctctagacctttctta 189  Q
    ||||||||||||||||||||||||||| ||||| |||||| |  ||||| || | |||||||| |||| ||||||||    
T  27998681 catggatcaaacgacgtcataatattctatcatatatcatgttcctatctaactcattaatctgtagatctttctta 27998605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 15400169 - 15400123
Alignment:
Q  335 accaggttttgataaaagagaattcattgcaaattgcaatgtgaata 381  Q
    |||||||||| |||| ||| | |||||||||||||||||||||||||    
T  15400169 accaggttttaataagagatatttcattgcaaattgcaatgtgaata 15400123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41377787 - 41377751
Alignment:
Q  1 ctctgttttgtttgcttgtttcctctgcttttcctct 37  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  41377787 ctctgttttttttgcttgtttcctctgtttttcctct 41377751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 47147611 - 47147537
Alignment:
Q  115 catggatcaaacgacgtcataatattccatcatttatcatatctatccaatttattaatctctagacctttctta 189  Q
    |||||||||||| | | |||||| ||| ||||| |||||||||||||||| | ||||||||||||| ||||||||    
T  47147611 catggatcaaacaatgccataatgttctatcatatatcatatctatccaactcattaatctctagatctttctta 47147537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 49686933 - 49686891
Alignment:
Q  115 catggatcaaacgacgtcataatattccatcatttatcatatc 157  Q
    ||||| |||||||||| |||||||||||||||| |||||||||    
T  49686933 catggttcaaacgacgccataatattccatcatatatcatatc 49686891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 40018231 - 40018307
Alignment:
Q  115 catggatcaaacgacgtcataatattccatcatttatcatat--ctatccaatttattaatctctagacctttctta 189  Q
    |||||||||||||||| | |||| ||| ||||| ||||||||  |||||||| | ||| ||||||||| ||||||||    
T  40018231 catggatcaaacgacgccgtaatgttctatcatatatcatatccctatccaactcattgatctctagatctttctta 40018307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 23023465 - 23023389
Alignment:
Q  115 catggatcaaacgacgtcataatattccatcatttatcatat--ctatccaatttattaatctctagacctttctta 189  Q
    ||||||||||||||||||||||||||| ||||| |||||| |  |||||||| | |||||||| |||| ||||||||    
T  23023465 catggatcaaacgacgtcataatattctatcatatatcatgttcctatccaactcattaatctgtagatctttctta 23023389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 8197583 - 8197659
Alignment:
Q  115 catggatcaaacgacgtcataatattccatcatttatcata--tctatccaatttattaatctctagacctttctta 189  Q
    |||||||||||||||| |||||||||| ||||| |||||||  ||||||||| | |||||||| |||| ||||||||    
T  8197583 catggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttctta 8197659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 8202343 - 8202419
Alignment:
Q  115 catggatcaaacgacgtcataatattccatcatttatcata--tctatccaatttattaatctctagacctttctta 189  Q
    |||||||||||||||| |||||||||| ||||| |||||||  ||||||||| | |||||||| |||| ||||||||    
T  8202343 catggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttctta 8202419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 5852343 - 5852387
Alignment:
Q  112 ctgcatggatcaaacgacgtcataatattccatcatttatcatat 156  Q
    ||||||||||||||||||||||||||| || ||||| ||||||||    
T  5852343 ctgcatggatcaaacgacgtcataatactctatcatatatcatat 5852387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 46367429 - 46367496
Alignment:
Q  115 catggatcaaacgacgtcataatattccatcatttatcatatc--tatccaatttattaatctctaga 180  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||  ||||||| | ||| |||||||||    
T  46367429 catggatcaaacgacgtcataatgttctatcatatatcatatccttatccaactcattcatctctaga 46367496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 40138990 - 40139066
Alignment:
Q  115 catggatcaaacgacgtcataatattccatcatttatcata--tctatccaatttattaatctctagacctttctta 189  Q
    ||||||||||| ||||||||||||||| ||||| | |||||  |||||| ||   ||||||||||||| ||||||||    
T  40138990 catggatcaaatgacgtcataatattctatcatatgtcatatttctatcaaacgcattaatctctagatctttctta 40139066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 39526005 - 39525964
Alignment:
Q  115 catggatcaaacgacgtcataatattccatcatttatcatat 156  Q
    |||||||||||||||| |||||||||| ||||| ||||||||    
T  39526005 catggatcaaacgacgccataatattctatcatctatcatat 39525964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University