View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18530_high_6 (Length: 299)

Name: NF18530_high_6
Description: NF18530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18530_high_6
NF18530_high_6
[»] chr5 (4 HSPs)
chr5 (19-299)||(15402404-15402684)
chr5 (94-214)||(15400879-15400999)
chr5 (128-227)||(41377811-41377910)
chr5 (128-224)||(43281128-43281224)
[»] chr2 (1 HSPs)
chr2 (133-224)||(42975800-42975891)
[»] chr1 (3 HSPs)
chr1 (128-227)||(50204523-50204622)
chr1 (128-179)||(43866283-43866334)
chr1 (128-224)||(33966642-33966738)
[»] chr7 (4 HSPs)
chr7 (128-224)||(32368114-32368210)
chr7 (128-224)||(23636693-23636789)
chr7 (136-224)||(46082472-46082560)
chr7 (128-220)||(19781082-19781174)
[»] chr8 (2 HSPs)
chr8 (128-271)||(36881520-36881662)
chr8 (128-160)||(1468979-1469011)
[»] chr6 (4 HSPs)
chr6 (129-224)||(25101031-25101126)
chr6 (129-224)||(6539490-6539585)
chr6 (128-166)||(18133896-18133934)
chr6 (128-166)||(23890008-23890046)
[»] chr3 (3 HSPs)
chr3 (129-224)||(7227137-7227232)
chr3 (129-223)||(50063918-50064012)
chr3 (128-164)||(43061133-43061169)
[»] chr4 (2 HSPs)
chr4 (128-221)||(10601679-10601772)
chr4 (128-222)||(55911185-55911279)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 15402684 - 15402404
Alignment:
Q  19 ctataagcatatctttttaaggacaagatattcttttataactcacgctatcaaatggatccgacaacaactacaacaatcacgccttatctcacaaact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402684 ctataagcatatctttttaaggacaagatattcttttataactcacgctatcaaatggatccgacaacaactacaacaatcacgccttatctcacaaact 15402585  T
Q  119 gaggctggtttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402584 gaggctggtttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtt 15402485  T
Q  219 tttgctttgattctcctttgtttcatctgttcttactctattttctctgttttgtttgcttgtttcctttgcttctcctct 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  15402484 tttgctttgattctcctttgtttcatctgttcttactctattttctctgttttgtttgcttgtttcctctgcttttcctct 15402404  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 15400999 - 15400879
Alignment:
Q  94 acaatcacgccttatctcacaaactgaggctggtttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcg 193  Q
    |||||||  |||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||||  ||||| ||||| |||||  |||| ||||||||    
T  15400999 acaatcataccttatctcacaaactgaggttggcttgtaatcagaatcgagtgctggttcgtaggaccgtacgatcctacgtcccgcggcacctcaatcg 15400900  T
Q  194 tacttcgactttactcaggtt 214  Q
    |||||||||||||||||||||    
T  15400899 tacttcgactttactcaggtt 15400879  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 41377910 - 41377811
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttg 227  Q
    ||||||||||||| ||| ||||||| ||||||| ||||| |||||  ||||| |||| ||||||||| |||||||||||||||||||||||| |||||||    
T  41377910 ttgtagtcaggattgagagctggtttgtaggatcgtacgatcctacttcccacggcacctcaatcgtgcttcgactttactcaggttcgtttctgctttg 41377811  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 43281224 - 43281128
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 224  Q
    ||||||||||||||  |||||||||| |||||| ||||| | |||  ||||| |||| ||||||| | |||||||||||||||||||||||||||||    
T  43281224 ttgtagtcaggatctcgtgctggttcataggatcgtacgattctacatcccacggcacctcaatcatgcttcgactttactcaggttcgtttttgct 43281128  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 42975891 - 42975800
Alignment:
Q  133 gtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 224  Q
    |||||||| |||| |||||||||||||| ||||| ||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  42975891 gtcaggatagagttctggttcgtaggatcgtacgatcctacgtcccacggcatctcaatcgtacttcaactttactcagcttcgtttttgct 42975800  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 50204523 - 50204622
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttg 227  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||| || |||  ||| ||||||||| |||||||||||||||||||| ||||| |||||    
T  50204523 ttgtagtcaggatcgagtgctggttcgtaggatcgtatgatcctacgttccacagcacctcaatcgtgcttcgactttactcaggttcattttttctttg 50204622  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 43866283 - 43866334
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtccca 179  Q
    |||||||||||||||||||||||||||||||||  |||| ||||||| ||||    
T  43866283 ttgtagtcaggatcgagtgctggttcgtaggatcttacgatcctatggccca 43866334  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 33966642 - 33966738
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 224  Q
    |||||| |||||||||||||||| |||||||||  |||| | ||| || ||| |||| ||||| ||| ||| ||||| ||||  |||||||||||||    
T  33966642 ttgtagccaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgtgctttgacttcactccagttcgtttttgct 33966738  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 32368114 - 32368210
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 224  Q
    |||||||| || ||||||||||||||||||||| |||||  |||| |||||| ||||||||||  || ||||||||||||||| |||||||||||||    
T  32368114 ttgtagtccgggtcgagtgctggttcgtaggatcgtacgaccctacgtcccacggcatctcaactgtgcttcgactttactcatgttcgtttttgct 32368210  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 23636693 - 23636789
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 224  Q
    ||||||||||||||||||||||||||||||| | ||||  |   | |||| | |||| ||||||||| |||||||||||| |||||| |||||||||    
T  23636693 ttgtagtcaggatcgagtgctggttcgtaggttcgtacaatttgacgtccaacggcacctcaatcgtgcttcgactttacccaggtttgtttttgct 23636789  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 46082560 - 46082472
Alignment:
Q  136 aggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 224  Q
    |||||| |||||||| || |||||| ||||| | |||||||||   ||| ||||| ||| |||||||||||||| | ||||||||||||    
T  46082560 aggatccagtgctggctcataggatcgtacgattctatgtccctccgcacctcaaccgtgcttcgactttactccgattcgtttttgct 46082472  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 19781174 - 19781082
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttt 220  Q
    |||||||||||| |||||||||||| |||| || ||||| |||||  ||| | | || |||||| || || |||||||||||| | |||||||    
T  19781174 ttgtagtcaggaacgagtgctggtttgtagaatagtacgatcctacatccaacgacacctcaattgtgctccgactttactcaaggtcgtttt 19781082  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 128 - 271
Target Start/End: Original strand, 36881520 - 36881662
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttg 227  Q
    ||||| ||||||| ||||||||||| ||||||| || || ||||| |||||| |||| |||||| || |||| |||||||||||||||||||||||| ||    
T  36881520 ttgtattcaggatagagtgctggtttgtaggatcgttcgatcctacgtcccaaggcacctcaattgtgcttcaactttactcaggttcgtttttgctctg 36881619  T
Q  228 attctcctttgtttcatctgttcttactctattttctctgtttt 271  Q
     || |||| |||||  |||||| ||  ||| |||||||||||||    
T  36881620 -ttttcctctgtttgctctgtttttcttctgttttctctgtttt 36881662  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 1468979 - 1469011
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggat 160  Q
    |||||||||||||||||||||||||||||||||    
T  1468979 ttgtagtcaggatcgagtgctggttcgtaggat 1469011  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 25101126 - 25101031
Alignment:
Q  129 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 224  Q
    ||||| |||||||||||||||| |||||||||  |||| | |||||||||| |||| ||||| ||| ||||||||| |||| ||||||||||||||    
T  25101126 tgtagccaggatcgagtgctggctcgtaggatcttacgattctatgtcccacggcacctcaaccgtgcttcgacttcactccggttcgtttttgct 25101031  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 6539585 - 6539490
Alignment:
Q  129 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 224  Q
    |||||| ||||||||||||||| ||||||||| ||| | |||||   |||| | |||||||| ||| |||| ||||||||||||||| ||||||||    
T  6539585 tgtagtaaggatcgagtgctggatcgtaggatcgtatgatcctacaccccacgtcatctcaaccgtgcttcaactttactcaggttcatttttgct 6539490  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 18133934 - 18133896
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacg 166  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  18133934 ttgtagtcaggatcgagtgctggctcgtaggattgtacg 18133896  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 23890046 - 23890008
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacg 166  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  23890046 ttgtagtcaggatcgagtgctggctcgtaggatcgtacg 23890008  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 7227137 - 7227232
Alignment:
Q  129 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 224  Q
    |||||||||||| ||||||||| || |||||||||||| | ||| ||||||  ||| ||| | | | |||||||||||||| ||||||||||||||    
T  7227137 tgtagtcaggattgagtgctggctcttaggattgtacgattctacgtcccacagcacctcgaccatgcttcgactttactccggttcgtttttgct 7227232  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 50063918 - 50064012
Alignment:
Q  129 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgc 223  Q
    ||||| |||||||||||||||| |||||||||  |||| | ||| || ||| |||| ||||| ||  ||||||||| |||| |||||||||||||    
T  50063918 tgtagccaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgagcttcgacttcactccggttcgtttttgc 50064012  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 43061133 - 43061169
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgta 164  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  43061133 ttgtagtcagggtcgagtgctggtacgtaggattgta 43061169  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 10601772 - 10601679
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgttttt 221  Q
    ||||||||| | ||||||| | |||||||||||  |||  ||||| |||||||| || ||||||| |  |||||||||||||| ||||||||||    
T  10601772 ttgtagtcaagttcgagtgtttgttcgtaggatcttacaatcctacgtcccatgacacctcaatcatgtttcgactttactcatgttcgttttt 10601679  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 55911185 - 55911279
Alignment:
Q  128 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgacttt-actcaggttcgtttttg 222  Q
    ||||||||| |||||||||||||||||||||||  |||| |||||  | ||| |||| ||||||||| ||| |||||| | ||| |||||||||||    
T  55911185 ttgtagtcaagatcgagtgctggttcgtaggatcatacgatcctacat-ccacggcacctcaatcgtgctttgactttaagtcaagttcgtttttg 55911279  T

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