View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18530_high_7 (Length: 259)

Name: NF18530_high_7
Description: NF18530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18530_high_7
NF18530_high_7
[»] chr3 (24 HSPs)
chr3 (14-241)||(43151266-43151493)
chr3 (40-237)||(6783875-6784073)
chr3 (22-150)||(25712264-25712392)
chr3 (67-143)||(24574647-24574723)
chr3 (119-241)||(39338151-39338273)
chr3 (85-241)||(27593260-27593416)
chr3 (162-241)||(24574816-24574895)
chr3 (155-241)||(25713328-25713415)
chr3 (119-241)||(26005837-26005959)
chr3 (91-171)||(10215868-10215947)
chr3 (91-171)||(10225497-10225576)
chr3 (78-161)||(44701730-44701813)
chr3 (119-241)||(24150686-24150808)
chr3 (119-241)||(46252057-46252179)
chr3 (119-241)||(50900301-50900423)
chr3 (87-168)||(34292335-34292416)
chr3 (155-241)||(13662656-13662742)
chr3 (119-241)||(19552002-19552124)
chr3 (119-241)||(35731040-35731162)
chr3 (155-241)||(36054897-36054983)
chr3 (155-241)||(52024089-52024175)
chr3 (183-241)||(53183991-53184049)
chr3 (88-201)||(45926768-45926881)
chr3 (91-171)||(10104720-10104799)
[»] chr5 (10 HSPs)
chr5 (22-241)||(6902428-6902647)
chr5 (21-237)||(7857137-7857353)
chr5 (53-241)||(26876256-26876446)
chr5 (140-241)||(10571219-10571320)
chr5 (78-171)||(27786381-27786474)
chr5 (85-237)||(6828612-6828764)
chr5 (85-241)||(17518536-17518693)
chr5 (78-201)||(28594254-28594377)
chr5 (78-168)||(9689158-9689248)
chr5 (91-171)||(26795339-26795418)
[»] chr2 (20 HSPs)
chr2 (24-241)||(38822692-38822910)
chr2 (22-241)||(2373077-2373297)
chr2 (29-241)||(24935902-24936114)
chr2 (29-241)||(25684586-25684798)
chr2 (55-241)||(27090743-27090930)
chr2 (29-241)||(38536018-38536230)
chr2 (85-237)||(11534947-11535099)
chr2 (85-241)||(24193306-24193462)
chr2 (85-241)||(34028752-34028909)
chr2 (85-241)||(11998237-11998393)
chr2 (85-241)||(20157577-20157733)
chr2 (23-85)||(2485367-2485429)
chr2 (119-241)||(29941053-29941175)
chr2 (140-241)||(24193657-24193758)
chr2 (78-193)||(39698419-39698531)
chr2 (89-201)||(37981769-37981881)
chr2 (78-169)||(2085725-2085816)
chr2 (85-162)||(10441442-10441519)
chr2 (78-168)||(17330414-17330504)
chr2 (85-241)||(45547039-45547195)
[»] chr7 (18 HSPs)
chr7 (22-241)||(31494347-31494566)
chr7 (29-241)||(32630806-32631018)
chr7 (29-241)||(36355248-36355459)
chr7 (32-241)||(24939418-24939626)
chr7 (33-219)||(48545588-48545772)
chr7 (32-241)||(47031353-47031562)
chr7 (78-161)||(46037163-46037246)
chr7 (78-200)||(3634353-3634475)
chr7 (87-241)||(40097202-40097356)
chr7 (119-241)||(151966-152088)
chr7 (135-241)||(39301115-39301221)
chr7 (119-241)||(43057535-43057657)
chr7 (78-170)||(42678006-42678098)
chr7 (155-241)||(27418532-27418618)
chr7 (155-241)||(30110911-30110997)
chr7 (155-241)||(47914947-47915033)
chr7 (84-201)||(37042383-37042499)
chr7 (142-194)||(41827259-41827311)
[»] chr1 (19 HSPs)
chr1 (22-241)||(9191239-9191458)
chr1 (21-143)||(49459903-49460025)
chr1 (85-241)||(1928224-1928380)
chr1 (85-241)||(36402355-36402511)
chr1 (87-241)||(33243132-33243286)
chr1 (87-241)||(33263305-33263459)
chr1 (78-161)||(48194778-48194861)
chr1 (85-241)||(29208863-29209019)
chr1 (78-161)||(48203536-48203619)
chr1 (140-241)||(10896908-10897009)
chr1 (78-161)||(19007393-19007476)
chr1 (78-193)||(42657871-42657985)
chr1 (119-241)||(26882680-26882802)
chr1 (78-158)||(27198462-27198542)
chr1 (119-241)||(52705501-52705623)
chr1 (85-162)||(14555131-14555208)
chr1 (87-149)||(14228883-14228945)
chr1 (86-151)||(4289131-4289196)
chr1 (135-219)||(9831420-9831504)
[»] chr6 (8 HSPs)
chr6 (29-241)||(35164912-35165124)
chr6 (85-241)||(30877960-30878116)
chr6 (78-161)||(7100352-7100435)
chr6 (78-161)||(8794195-8794278)
chr6 (85-241)||(10643832-10643990)
chr6 (78-161)||(709102-709185)
chr6 (155-241)||(6476603-6476689)
chr6 (78-107)||(31609506-31609535)
[»] chr8 (18 HSPs)
chr8 (32-234)||(24296419-24296621)
chr8 (20-195)||(38806685-38806861)
chr8 (23-164)||(14723726-14723867)
chr8 (140-241)||(35142150-35142251)
chr8 (85-241)||(8502740-8502896)
chr8 (118-241)||(23185805-23185928)
chr8 (78-171)||(24318094-24318187)
chr8 (119-241)||(30382528-30382650)
chr8 (119-241)||(40265135-40265257)
chr8 (119-241)||(4302662-4302784)
chr8 (85-219)||(37567192-37567326)
chr8 (119-241)||(2112899-2113021)
chr8 (155-241)||(10802661-10802747)
chr8 (119-241)||(29260130-29260252)
chr8 (155-241)||(41386760-41386846)
chr8 (140-241)||(9209144-9209245)
chr8 (79-152)||(39038937-39039010)
chr8 (142-194)||(32497434-32497486)
[»] chr4 (18 HSPs)
chr4 (32-241)||(5117069-5117279)
chr4 (85-241)||(33449999-33450155)
chr4 (78-171)||(37370700-37370793)
chr4 (85-241)||(54509822-54509975)
chr4 (78-161)||(38230960-38231043)
chr4 (85-161)||(28846922-28846998)
chr4 (78-201)||(28100395-28100518)
chr4 (119-241)||(45332774-45332896)
chr4 (119-241)||(47685252-47685374)
chr4 (85-241)||(42720827-42720983)
chr4 (85-219)||(26336198-26336332)
chr4 (119-241)||(45340464-45340586)
chr4 (88-201)||(53594234-53594347)
chr4 (119-241)||(8583859-8583981)
chr4 (155-241)||(8880552-8880638)
chr4 (135-241)||(40143884-40143990)
chr4 (155-241)||(42218336-42218422)
chr4 (86-152)||(53272106-53272172)
[»] scaffold0287 (1 HSPs)
scaffold0287 (78-200)||(11610-11732)
[»] scaffold0202 (1 HSPs)
scaffold0202 (140-241)||(16417-16518)
[»] scaffold0472 (1 HSPs)
scaffold0472 (78-170)||(1698-1790)
[»] scaffold0016 (1 HSPs)
scaffold0016 (119-241)||(81636-81758)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 43151493 - 43151266
Alignment:
Q  14 gaacaagggagtaagaagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccat 113  Q
    |||||||||||||| |||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  43151493 gaacaagggagtaaaaagagtctcatgaaatctcatgtctttgtacaagattgttagttttaaaattttcaactaaaaagtctcacaaaattcatcccac 43151394  T
Q  114 caaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctt 213  Q
    ||| ||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||    
T  43151393 caagtaatccattaaaatctatatatttttaaataccaaaggacaatttttaagttgtataaatttttgattgaataccaccgaaatttagtagactctt 43151294  T
Q  214 taaaaatccttgaaaatcctaattgaat 241  Q
    |||||||  |||||||||||||||||||    
T  43151293 taaaaatttttgaaaatcctaattgaat 43151266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 6783875 - 6784073
Alignment:
Q  40 gaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaata-atccattgaaatctataca 138  Q
    |||||||||| | ||||||| ||||||||| |||| || |||||||||||||||| ||||||||||||| | || || || |||||||||||||||||||    
T  6783875 gaaatctcatatctttgtatgagattgttaattttgaatttttcaactaaaaagtttcacaaaatccattctattaagtatatccattgaaatctataca 6783974  T
Q  139 tttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaatt 237  Q
    |||||||||| |||  |||||||||||||||||  ||| ||||||| ||||||||||| |||| | | |||||||||||||  | |||||||| |||||    
T  6783975 tttttgaatatcaagagacaatttttaagttgtggaaaatcttgatggaataccaccgaatttggttggactctttaaaaaatcctgaaaatcttaatt 6784073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 25712264 - 25712392
Alignment:
Q  22 gagtaagaagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataat 121  Q
    |||||| || ||||| | ||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||    
T  25712264 gagtaaaaaaagtcttacgaaatatcaggtatttgtgtgagattgttagttttaaaattttcaactaaaaagtctcacaaaatccattctaccaagtaat 25712363  T
Q  122 ccattgaaatctatacatttttgaatacc 150  Q
    |||||||||||| ||  ||||||||||||    
T  25712364 ccattgaaatctttaagtttttgaatacc 25712392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 24574647 - 24574723
Alignment:
Q  67 ttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacattttt 143  Q
    |||||||||||||||||| |||||||||||||||||||||||   | ||| ||||||||||||||||||||||||||    
T  24574647 ttagttttaaaattttcacctaaaaagtctcacaaaatccattatagcaagtaatccattgaaatctatacattttt 24574723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 39338151 - 39338273
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  |||| |||||||||||||  |||||||||||||||||  ||| |||  |||||||||||| |||||||  | ||||| ||||||    
T  39338151 aatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggattttattggactcattaaaa 39338250  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  | | ||||||||||||||||    
T  39338251 aatcctaaaaatcctaattgaat 39338273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 27593416 - 27593260
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||||||||||||||||||  | ||| || |||||||| |||||  |||| |||||||||||||  ||||||||||||| |||  |||  ||  |    
T  27593416 actaaaaagtctcacaaaatccattac-tcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagatgtgcaaaacctcaa 27593318  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||| | |||||  | ||||| |||||||  | ||||||||||||||||||    
T  27593317 ttgaataccactgaattttattggactcattaaaaaatcatgaaaatcctaattgaat 27593260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 24574816 - 24574895
Alignment:
Q  162 tttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    |||||||||| |||| |||||||||||||| |||| |||||| | || ||||||||||   |||||||||||||||||||    
T  24574816 tttaagttgtgtaaaatcttgattgaatactaccgaattttgttggattctttaaaaaattttgaaaatcctaattgaat 24574895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 25713328 - 25713415
Alignment:
Q  155 gacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactcttt-aaaaatccttgaaaatcctaattgaat 241  Q
    |||||||||||||||||  ||| |||||||||||||||| ||||||||| | || ||||| |||||  | ||||||||||||||||||    
T  25713328 gacaatttttaagttgtgaaaaatcttgattgaataccaacggattttgttggattctttaaaaaaatcatgaaaatcctaattgaat 25713415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 26005837 - 26005959
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| ||||| ||| | ||||||||||||   ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| ||||||    
T  26005837 aatccattaaaatccatagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaa 26005936  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  26005937 aatcttgaaaatcctaattgaat 26005959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 10215868 - 10215947
Alignment:
Q  91 aagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgt 171  Q
    |||||| |||||||||||||||| ||| ||| ||| |||||||||  ||||||||||||| ||||||| ||| ||||||||    
T  10215868 aagtcttacaaaatccatcccat-aaagaattcatcgaaatctatcaatttttgaatacccaaggacattttataagttgt 10215947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 10225497 - 10225576
Alignment:
Q  91 aagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgt 171  Q
    ||||||||||||||||||| ||| ||| ||| ||| |||||||||  ||||||||||||| ||||||| ||| ||||||||    
T  10225497 aagtctcacaaaatccatcacat-aaagaattcatcgaaatctatcaatttttgaatacccaaggacattttataagttgt 10225576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 44701813 - 44701730
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatt 161  Q
    ||||| ||||||||||||||| ||||||||| ||||| |  |||||||  ||||||||| | |||||||||||||  |||||||    
T  44701813 atttttaactaaaaagtctcataaaatccattccatccatgaatccatcaaaatctatagacttttgaataccaatagacaatt 44701730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 24150686 - 24150808
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | ||||||||||||  |||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| ||||||    
T  24150686 aatccattaaaatccgtagagttttgaataccagtggacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaa 24150785  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||| ||||||||||||||||    
T  24150786 aatcttcaaaatcctaattgaat 24150808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 46252057 - 46252179
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | ||||||||||||   ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| ||||||    
T  46252057 aatccattaaaatccgtaaagttttgaataccagcagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaa 46252156  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  46252157 aatcttgaaaatcctaattgaat 46252179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 50900301 - 50900423
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||| || | ||||||||||||   ||||||||||||||| |  ||| |||  || ||||||||| ||||||   | ||||| ||||||    
T  50900301 aatccattaaaatctctagagttttgaataccagtagacaatttttaagttatgcaaaatctcaatcgaataccactggatttcattggactcattaaaa 50900400  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  50900401 aagcttgaaaatcctaattgaat 50900423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 34292335 - 34292416
Alignment:
Q  87 taaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagt 168  Q
    |||||| ||||||||||||||  |||| ||| ||||| || ||||||||| | |||||||||| || ||||| |||||||||    
T  34292335 taaaaaatctcacaaaatccactccataaaagaatcctttaaaatctatatacttttgaatacaaacggacattttttaagt 34292416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 13662742 - 13662656
Alignment:
Q  155 gacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    |||||||||||||||||   || |||  |||||||||||| ||||||   | ||||| |||||||  ||||||||||||||||||||    
T  13662742 gacaatttttaagttgtgcgaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaatcctaattgaat 13662656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 19552002 - 19552124
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||| ||| |||||| || | ||||||||||||   ||||||||||||||| |  ||| |||| ||| |||||||| ||||||   |  |||| ||||||    
T  19552002 aatcaattaaaatctgtagagttttgaataccactagacaatttttaagttatgcaaaatcttaattaaataccactggatttcattgaactcgttaaaa 19552101  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  19552102 aatcttgaaaatcctaattgaat 19552124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 35731162 - 35731040
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | ||||||||||||   ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| ||||||    
T  35731162 aatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactggatttgattggactcattaaaa 35731063  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  |||||||||| |||||||||    
T  35731062 aatcttgaaaatcttaattgaat 35731040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 36054897 - 36054983
Alignment:
Q  155 gacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| |||||||  ||||||||||||||||||||    
T  36054897 gacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaatcctaattgaat 36054983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 52024089 - 52024175
Alignment:
Q  155 gacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    |||||||||||| ||||  ||| |||  |||||||||||| |||||||  | ||||| |||||||  |||||||||| |||||||||    
T  52024089 gacaatttttaaattgtgcaaaatctcaattgaataccactggattttattggactcattaaaaaatcttgaaaatcataattgaat 52024175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 53183991 - 53184049
Alignment:
Q  183 attgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||| ||||||  | ||||| |||||||  ||||||||||||||||||||    
T  53183991 attgaataccaccagattttattggactcattaaaaaatcttgaaaatcctaattgaat 53184049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 45926768 - 45926881
Alignment:
Q  88 aaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattga 187  Q
    ||||||||||||||||| | |  ||| ||| |||||||| ||||||||  ||||||||||||| || || | ||| ||||||||   || || | |||||    
T  45926768 aaaaagtctcacaaaatacgttgcataaaagaatccattaaaatctatcaatttttgaataccgaatgagattttataagttgtgagaaatcctaattga 45926867  T
Q  188 ataccaccggattt 201  Q
    |||||| |||||||    
T  45926868 ataccaacggattt 45926881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 10104720 - 10104799
Alignment:
Q  91 aagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgt 171  Q
    ||||||||||||||||||||||| ||| |||  || ||| |||||  ||||||||||||| || |||| ||| ||||||||    
T  10104720 aagtctcacaaaatccatcccat-aaagaattaatcgaagtctatcaatttttgaatacccaaagacattttataagttgt 10104799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 6902428 - 6902647
Alignment:
Q  22 gagtaagaagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataat 121  Q
    |||||| |||||||||| |||||||||| | ||||||| ||||||||||||||| |||||| |||||||||||||||||||||| || | | ||| ||||    
T  6902428 gagtaaaaagagtctcaagaaatctcatatctttgtatgagattgttagttttacaatttttaactaaaaagtctcacaaaatcaattctaccaagtaat 6902527  T
Q  122 ccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatc 221  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||||||| ||| |||||||||||||||||| ||||||| | |||||||||||||      
T  6902528 ccattgaaatcaatacatttttgaataccaagagacaatttttaagttgtaaaaaatcttgattgaataccaccagattttgttggactctttaaaaaat 6902627  T
Q  222 cttgaaaatcctaattgaat 241  Q
    | | ||||||||||||||||    
T  6902628 cattaaaatcctaattgaat 6902647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 7857353 - 7857137
Alignment:
Q  21 ggagtaagaagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataa 120  Q
    ||||||| |||||| ||| |||||||||||| ||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||| | | ||| |||    
T  7857353 ggagtaaaaagagtttcaagaaatctcatgtctttgtatgagattgttagttttaaaaattttaacaaaaaagtctcacaaaatccattctaccaagtaa 7857254  T
Q  121 tccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaat 220  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||||| |  || || |||||||||| || ||||||| | ||||||||||||||    
T  7857253 tccattgaaatctatacatttttgaatatcaagagacaatttttaagttgtaaatttttttaattgaataccgccagattttgttggactctttaaaaat 7857154  T
Q  221 ccttgaaaatcctaatt 237  Q
     | | ||||||||||||    
T  7857153 tcattaaaatcctaatt 7857137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 26876446 - 26876256
Alignment:
Q  53 tttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaa 152  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||  ||||| ||   |  || |||||||||||||| |||  ||||| |||||| ||    
T  26876446 tttgtatgagattgttagttttaaaattttaaactaaaaagtctca--aaatctattatactaagtaatccattgaaatatattaattttagaatactaa 26876349  T
Q  153 aggacaatttttaagttgtataaattcttgattga----ataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
      |||||||||||||||||  ||| ||||||||||    |||||| | ||||||| || ||||||||||||  | ||||||||||||||||||    
T  26876348 gagacaatttttaagttgtgaaaaatcttgattgaatatataccatccgattttgttaaactctttaaaaaatcctgaaaatcctaattgaat 26876256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 10571320 - 10571219
Alignment:
Q  140 ttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattga 239  Q
    |||||||||||||  |||||||||||||||||| ||| |||| ||||||||||||||||||||  | |||||||||||||   |||||||||||||||||    
T  10571320 ttttgaataccaatagacaatttttaagttgtacaaaatcttaattgaataccaccggattttattggactctttaaaaaattttgaaaatcctaattga 10571221  T
Q  240 at 241  Q
    ||    
T  10571220 at 10571219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 27786474 - 27786381
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgt 171  Q
    ||||| ||||||||||||||||||||||||| |||| ||| |||||||| ||||||||  ||||||||||||| || |||| ||| ||||||||    
T  27786474 atttttaactaaaaagtctcacaaaatccattccataaaagaatccattaaaatctatcaatttttgaataccgaatgacattttataagttgt 27786381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 237
Target Start/End: Original strand, 6828612 - 6828764
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||||||||||||||||||  | ||| || |||||||| |||||  |||| ||||||||| |||  |||||||||||||||||  ||| |||  |    
T  6828612 actaaaaagtctcacaaaatccattac-tcataacaatccattaaaatccttacaattttgaatatcaatagacaatttttaagttgtgcaaaatctcaa 6828710  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaatt 237  Q
    ||||||||||| |||||||  | ||||| |||||||  | ||||||||||||||    
T  6828711 ttgaataccactggattttattggactcattaaaaaatcctgaaaatcctaatt 6828764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 17518693 - 17518536
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgat 184  Q
    ||||||||||||||||||||||||  |    || | |||||| |||||  || | |||||||| ||||   ||||||||||||||||  ||| |||| ||    
T  17518693 actaaaaagtctcacaaaatccattactcgcaacattccattaaaatccgtagaattttgaatcccaataaacaatttttaagttgtgcaaaatcttaat 17518594  T
Q  185 tgaataccaccgg-attttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||| |||||  | |||||||||||||  ||||||||||||||||||||    
T  17518593 tgaataccaccgggattttattggactctttaaaaaatcttgaaaatcctaattgaat 17518536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 201
Target Start/End: Original strand, 28594254 - 28594377
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaat 177  Q
    ||||| |||||||||||||||||||||||||   || ||| |||||||| ||||||||  ||||||||||||| || |||| ||| ||||||||   ||     
T  28594254 atttttaactaaaaagtctcacaaaatccattatataaaagaatccattaaaatctatcaatttttgaataccgaaagacattttataagttgtgagaaa 28594353  T
Q  178 tcttgattgaataccaccggattt 201  Q
    || | ||||||||||| |||||||    
T  28594354 tcctaattgaataccaacggattt 28594377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 9689158 - 9689248
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagt 168  Q
    ||||| ||||||||||||||||||||| ||  ||||| ||||||||||| ||||||||  ||||||||||| ||| ||||| ||| |||||    
T  9689158 atttttaactaaaaagtctcacaaaattcactccatccaataatccattaaaatctatgtatttttgaatatcaatggacattttataagt 9689248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 26795339 - 26795418
Alignment:
Q  91 aagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgt 171  Q
    ||||||||||||||||||||||| ||| |||  || ||| |||||  ||||||||||||| || |||| ||| ||||||||    
T  26795339 aagtctcacaaaatccatcccat-aaagaattaatcgaagtctatcaatttttgaatacccaaagacattttataagttgt 26795418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 38822692 - 38822910
Alignment:
Q  24 gtaagaagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatcc 123  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||   | ||| ||||||    
T  38822692 gtaaaaagagtctcaagaaatctcatgtctttgtatgagattgttagttttaaaattttcaactaaaaaatctcacaaaatccattataccaagtaatcc 38822791  T
Q  124 attgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactcttt-aaaaatcc 222  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||  ||| ||||||| |||||||||||||||||| | || ||||| |||||  |    
T  38822792 attgaaatctatacattttttaataccaagagacaatttttaagttgtgaaaaatcttgatcgaataccaccggattttgttggattctttaaaaaaatc 38822891  T
Q  223 ttgaaaatcctaattgaat 241  Q
    |||||||||||||||||||    
T  38822892 ttgaaaatcctaattgaat 38822910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 2373297 - 2373077
Alignment:
Q  22 gagtaagaagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataat 121  Q
    |||||| || |||||||  ||||||||  ||||| | | |||||||||||||||||||||||||||||||||||||| ||||||||| | | ||| ||||    
T  2373297 gagtaaaaaaagtctcaaaaaatctcagatatttatgtgagattgttagttttaaaattttcaactaaaaagtctcagaaaatccattctaccaagtaat 2373198  T
Q  122 ccattgaaatc-tatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaat 220  Q
    ||||||||||| | ||  |||||||||| ||| ||||||||||||||||||  ||| |||||||| ||||||| || |||||| | ||||||||||||||    
T  2373197 ccattgaaatcttttaagtttttgaatatcaagggacaatttttaagttgtgaaaaatcttgattaaataccaacgaattttgttggactctttaaaaat 2373098  T
Q  221 ccttgaaaatcctaattgaat 241  Q
     | ||||||||||||||||||    
T  2373097 tcatgaaaatcctaattgaat 2373077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 24935902 - 24936114
Alignment:
Q  29 aagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattga 128  Q
    |||||||| | ||||||||| ||  || ||| ||||||||||||||||||||||||||||||||||||||||||||| ||   || ||  |||||||| |    
T  24935902 aagagtcttaagaaatctcaagtccttatatgagattgttagttttaaaattttcaactaaaaagtctcacaaaatctattatattaaggaatccattaa 24936001  T
Q  129 aatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaa 228  Q
    |||||||| ||||||||||| ||||||| |||||||||||||   ||| |||||||| |||||||||  |||||| | |||||||||||||| | |||||    
T  24936002 aatctatatatttttgaataacaaaggataatttttaagttgagaaaaatcttgatttaataccaccaaattttgttggactctttaaaaatgcctgaaa 24936101  T
Q  229 atcctaattgaat 241  Q
    ||| |||||||||    
T  24936102 atcttaattgaat 24936114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 25684586 - 25684798
Alignment:
Q  29 aagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattga 128  Q
    |||||||| | ||||||||| ||  || ||| ||||||||||||||||||||||||||||||||||||||||||||| ||   || ||  ||| |||| |    
T  25684586 aagagtcttaagaaatctcaagtccttatatgagattgttagttttaaaattttcaactaaaaagtctcacaaaatctattatattaaggaattcattaa 25684685  T
Q  129 aatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaa 228  Q
    |||||||| ||||||||||| ||||||| |||||||||||||   ||| |||||||| |||||||||  |||||| | |||||||||||||| | |||||    
T  25684686 aatctatatatttttgaataacaaaggataatttttaagttgagaaaaatcttgatttaataccaccaaattttgttggactctttaaaaatgcctgaaa 25684785  T
Q  229 atcctaattgaat 241  Q
    ||| |||||||||    
T  25684786 atcttaattgaat 25684798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 55 - 241
Target Start/End: Complemental strand, 27090930 - 27090743
Alignment:
Q  55 tgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacat-ttttgaataccaaa 153  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||| ||| |||||||||||| |||| ||||||||     
T  27090930 tgtatgagattgttagttttaaaattttcaactaaaaagtcttacaaaatccattctatcaagtaatctattaaaatctatacatttttttaataccaag 27090831  T
Q  154 ggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||||||||  ||| || |  ||||||||||| | |||||| | |||||||||||||  |   ||||||||||||||||    
T  27090830 ggacaatttttaagttgttaaaaatcatagttgaataccactgaattttgttggactctttaaaaaatcagtaaaatcctaattgaat 27090743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 38536018 - 38536230
Alignment:
Q  29 aagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattga 128  Q
    |||||||||| ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||   | |||  |||||||| |    
T  38536018 aagagtctcaagaaatctcacgtgtttgtatgagattgttagttttaaaattttcaactaaaaagtctcacaaaattcattgtagcaaggaatccattaa 38536117  T
Q  129 aatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaa 228  Q
    |||||||| |||||| ||||  ||  || | |||||||||||   ||| |||||||||||||  | | ||||||| | |||||||||||||  | | |||    
T  38536118 aatctatatatttttaaatattaagagatagtttttaagttgagaaaaatcttgattgaatatgatcagattttgttggactctttaaaaaatcataaaa 38536217  T
Q  229 atcctaattgaat 241  Q
    ||||| |||||||    
T  38536218 atccttattgaat 38536230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 11535099 - 11534947
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||||||||||||||||||  | ||| || |||||||| |||||  |||| |||||||||||||  |||||||||||||||||  ||| |||  |    
T  11535099 actaaaaagtctcacaaaatccattac-tcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaa 11535001  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaatt 237  Q
    |||||| |||| |||||||  | ||||| |||||||  | ||||||||||||||    
T  11535000 ttgaattccactggattttattggactcattaaaaaatcctgaaaatcctaatt 11534947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 24193306 - 24193462
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||||||||||||||||||  | ||| || |||||||| |||||  |||| |||||||||||||  |||||||||||||||||  ||| |||  |    
T  24193306 actaaaaagtctcacaaaatccattac-tcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaa 24193404  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||| | |||||  | ||||| |||||||  | ||||||| ||||||||||    
T  24193405 ttgaataccactgaattttattggactcattaaaaaatcctgaaaattctaattgaat 24193462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 34028752 - 34028909
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgat 184  Q
    ||||||||||||||||||||||||  |    || |||||||| |||||  || | |||||||||||||  |||||||||||||||||  ||| |||  ||    
T  34028752 actaaaaagtctcacaaaatccattactcgtaacaatccattaaaatccttataattttgaataccaatagacaatttttaagttgtgcaaaatctgaat 34028851  T
Q  185 tgaataccaccggatttt-ggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    |||||||||| |||||||   | ||||| |||||||  ||||||||||||||||||||    
T  34028852 tgaataccactggattttatttggactcattaaaaaatcttgaaaatcctaattgaat 34028909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 11998237 - 11998393
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||||||||||||||||||  | ||| || || ||||| |||||  || | |||||||||||||  ||||||||||||||||| |||| |||  |    
T  11998237 actaaaaagtctcacaaaatccattac-tcacaacaaaccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaa 11998335  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||| | |||||||  | ||||| |||||||    ||||||||||||||||||    
T  11998336 ttgaatacctctggattttattggactcattaaaaaattctgaaaatcctaattgaat 11998393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 20157577 - 20157733
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||||||||||||||||||  | ||| || |||| ||| |||||  || | |||||||||||||  |||||| ||||||||||  ||| |||  |    
T  20157577 actaaaaagtctcacaaaatccattac-tcataacaatctattaaaatccttagaattttgaataccaatagacaatatttaagttgtgcaaaatctgaa 20157675  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||| | |||||  | ||||| |||||||  ||||||||||||||||||||    
T  20157676 ttgaataccactgaattttattggactcattaaaaaatcttgaaaatcctaattgaat 20157733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 2485367 - 2485429
Alignment:
Q  23 agtaagaagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaa 85  Q
    ||||| |||||||||| ||||||||| || ||||||| |||||||||||||||||||| ||||    
T  2485367 agtaaaaagagtctcaagaaatctcaggtctttgtatgagattgttagttttaaaattctcaa 2485429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 29941175 - 29941053
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | ||||||||||||   ||||||||||||||| |  ||| |||  |||||||||||| ||||||   ||||||| ||||||    
T  29941175 aatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattagactcattaaaa 29941076  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  29941075 aatcttgaaaatcctaattgaat 29941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 24193758 - 24193657
Alignment:
Q  140 ttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattga 239  Q
    |||||||||||||   ||| ||||||||||||  ||| |||  |||||||||||||| |||||  | ||||| |||||||  ||||||||||||||||||    
T  24193758 ttttgaataccaataaacagtttttaagttgtgcaaaatctcaattgaataccaccgaattttattggactcattaaaaaatcttgaaaatcctaattga 24193659  T
Q  240 at 241  Q
    ||    
T  24193658 at 24193657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 39698419 - 39698531
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaat 177  Q
    ||||| ||||||||||||||| ||||||||||   ||||| |||||||  |||||| || ||||||||||||||   |||| ||| |||||| |  |||     
T  39698419 atttttaactaaaaagtctcataaaatccatcatttcaaagaatccatctaaatctttatatttttgaatacca---gacattttataagttatgaaaaa 39698515  T
Q  178 tcttgattgaatacca 193  Q
    ||||||||||||||||    
T  39698516 tcttgattgaatacca 39698531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 37981881 - 37981769
Alignment:
Q  89 aaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaa 188  Q
    |||||||||||||| || || |||| ||| |||||||  ||||||||  ||||||||||||| ||||||| ||| ||||||||   || || | ||||||    
T  37981881 aaaagtctcacaaattctattccataaaagaatccatcaaaatctatcaatttttgaatacctaaggacattttataagttgtgagaaatcctaattgaa 37981782  T
Q  189 taccaccggattt 201  Q
    ||||| |||||||    
T  37981781 taccaacggattt 37981769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 2085816 - 2085725
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagtt 169  Q
    |||||||| |||||||||||||||||||||| || | |||||||| ||| ||||||| | | ||||||||| |||  |||| ||| ||||||    
T  2085816 attttcaaataaaaagtctcacaaaatccattccgtaaaataatctattaaaatctacatacttttgaatatcaagagacattttataagtt 2085725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 10441442 - 10441519
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaattt 162  Q
    ||||||||||||| |||||||||  ||||| || |||||||  ||||||||| | |||||||||||||  ||||||||    
T  10441442 actaaaaagtctcgcaaaatccactccatccaagaatccatcaaaatctatagacttttgaataccaacagacaattt 10441519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 17330414 - 17330504
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagt 168  Q
    ||||| |||||||||| |||| |||||||| | || | || |||||||  ||||||||| | |||||||||||||| |||| ||| |||||    
T  17330414 atttttaactaaaaagactcataaaatccacctcacccaagaatccatcaaaatctatagacttttgaataccaaaagacattttataagt 17330504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 45547195 - 45547039
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgat 184  Q
    |||||| | |||||||||||||||  | |  || |||||||| |||||  || | ||||||||||||   ||||||||||||||| |   || |||  ||    
T  45547195 actaaacaatctcacaaaatccattacttacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgctaaatctcaat 45547096  T
Q  185 tgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    |||||||||| | ||||   | ||||| |||||||  ||||||||||||||||||||    
T  45547095 tgaataccactgaatttcattggactcattaaaaaatcttgaaaatcctaattgaat 45547039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 31494566 - 31494347
Alignment:
Q  22 gagtaagaagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataat 121  Q
    |||||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||| | | ||| ||||    
T  31494566 gagtaaaaagagtctcaagaaatctcatgtttttgtatgagattgttagttttaaaatttttaaccaaaaagtttcacaaaatccattctaccaagtaat 31494467  T
Q  122 ccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatc 221  Q
    ||||| ||||| |||||||||| ||||||||  |||||||||||||||||| ||| |||||||||||||||||| ||||||| | |||||||||||||      
T  31494466 ccattaaaatcaatacattttttaataccaagagacaatttttaagttgtaaaaaatcttgattgaataccaccagattttgtttgactctttaaaaaat 31494367  T
Q  222 cttgaaaatcctaattgaat 241  Q
    | | ||||||||||||||||    
T  31494366 cattaaaatcctaattgaat 31494347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 29 - 241
Target Start/End: Complemental strand, 32631018 - 32630806
Alignment:
Q  29 aagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattga 128  Q
    |||||||| | ||||||||| ||  || ||| |||||||||||||||||||||| |||||||||||||||||||||||||   |||||  |||||||| |    
T  32631018 aagagtcttaagaaatctcaggtccttatatgagattgttagttttaaaatttttaactaaaaagtctcacaaaatccattatatcaaggaatccattaa 32630919  T
Q  129 aatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaa 228  Q
    ||||||||||||||| | ||||||||||||||||||||||||   ||| |||||||  ||||||||| ||||||| | |||||||||||| | | |||||    
T  32630918 aatctatacattttttattaccaaaggacaatttttaagttgagaaaaatcttgatataataccaccagattttgttggactctttaaaagtgcctgaaa 32630819  T
Q  229 atcctaattgaat 241  Q
    |||||||||||||    
T  32630818 atcctaattgaat 32630806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 36355248 - 36355459
Alignment:
Q  29 aagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattga 128  Q
    |||||||| | ||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||   |||||  |||||||| |    
T  36355248 aagagtcttaagaaatctcaggtctttatatgagattgttagttttaaaattttcaactaaaaagtctcacaaaatccattatatcaaggaatccattaa 36355347  T
Q  129 aatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaa 228  Q
    |||||||||||||||||||| |||||||||||||||||||||   ||| |||||||| ||||||| | ||||||| | ||||| |||||||| | || ||    
T  36355348 aatctatacatttttgaataacaaaggacaatttttaagttgagaaaaatcttgatttaataccatcagattttgttggactccttaaaaatgcctg-aa 36355446  T
Q  229 atcctaattgaat 241  Q
    ||| |||||||||    
T  36355447 atcttaattgaat 36355459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 32 - 241
Target Start/End: Original strand, 24939418 - 24939626
Alignment:
Q  32 agtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaat 131  Q
    ||||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| || | || ||  ||| |||| ||||    
T  24939418 agtctcaagaaatctcatgtctttgcatgagattgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaat 24939517  T
Q  132 ctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatc 231  Q
    ||||| |||||||||||||||| ||| ||||||||||| |  ||| | || ||||||||||| | ||||||| | |||||||||||||| | ||||||||    
T  24939518 ctataaatttttgaataccaaa-gactatttttaagttatgaaaaattttaattgaataccatcagattttgttggactctttaaaaattcatgaaaatc 24939616  T
Q  232 ctaattgaat 241  Q
     |||||||||    
T  24939617 ataattgaat 24939626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 48545588 - 48545772
Alignment:
Q  33 gtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatc 132  Q
    |||||| ||||||||| || ||||||| | |||||||||||| ||||||| |||||||||||||||||||||||||  ||  ||  ||||||||||||||    
T  48545588 gtctcaagaaatctcaagtctttgtatgaaattgttagttttgaaatttttaactaaaaagtctcacaaaatccatttcaataaggaatccattgaaatc 48545687  T
Q  133 tatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaa 219  Q
    ||||||||||||||||||||  || |||||||||||||   ||| ||||||| ||||||||||| |||| | |||||||||||||||    
T  48545688 tatacatttttgaataccaa--gagaatttttaagttgcgaaaaatcttgatggaataccaccgaatttagttagactctttaaaaa 48545772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 47031562 - 47031353
Alignment:
Q  32 agtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaat 131  Q
    ||||||| ||||||||  || ||||||| |||||||||||||||||||||  || |||||||| | ||||||||||| | || || |||| |||||||||    
T  47031562 agtctcaagaaatctcgagtctttgtatgagattgttagttttaaaatttataattaaaaagttttacaaaatccattctattaagtaattcattgaaat 47031463  T
Q  132 ctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatc 231  Q
    |||||||||||| ||||||||  |||||||||||| ||||  || || ||||| ||||||||| |||||| | |  ||||||||||||| ||||||||||    
T  47031462 ctatacatttttaaataccaagagacaatttttaaattgtgaaattttttgatggaataccactggatttggttgaactctttaaaaattcttgaaaatc 47031363  T
Q  232 ctaattgaat 241  Q
     |||||||||    
T  47031362 ttaattgaat 47031353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 46037163 - 46037246
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatt 161  Q
    ||||| ||||||||||||||||||||||||| ||||| || |||||||  ||||||||| | |||||||||||||  |||||||    
T  46037163 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatagacaatt 46037246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 3634475 - 3634353
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaat 177  Q
    ||||| |||||||||||||| |||||||||| |||| ||| |||||||  ||||| ||  ||||||||||||||||  ||| ||| ||||||||   ||     
T  3634475 atttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatcaattaatttttgaataccaaaatacattttataagttgtgagaaa 3634376  T
Q  178 tcttgattgaataccaccggatt 200  Q
    |||| ||||||||||| ||||||    
T  3634375 tcttaattgaataccaacggatt 3634353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 241
Target Start/End: Complemental strand, 40097356 - 40097202
Alignment:
Q  87 taaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgatt 185  Q
    ||||||||||||||||||||||    ||| || |||||||| |||||  || | |||||||||||||  |||||||||||||||||  ||| |||  |||    
T  40097356 taaaaagtctcacaaaatccattag-tcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaatt 40097258  T
Q  186 gaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||| | |||||  | ||||| |||||||   ||||||||| |||||||||    
T  40097257 gaataccactgaattttattggactcattaaaaaattttgaaaatcataattgaat 40097202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 152088 - 151966
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | ||||||||||||   ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| ||||||    
T  152088 aatccattaaaatccgtagagttttgaataccattagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaa 151989  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  151988 aatcttgaaaatcctaattgaat 151966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 39301115 - 39301221
Alignment:
Q  135 tacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatccta 234  Q
    |||| |||||||||||||  |||||||||||||||||  ||| |||  |||||||||||| ||| |||  | ||||| |||||||    |||||||||||    
T  39301115 tacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggaatttattggactcattaaaaaattctgaaaatccta 39301214  T
Q  235 attgaat 241  Q
    |||||||    
T  39301215 attgaat 39301221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 43057535 - 43057657
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | ||||||||||||   ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| ||||||    
T  43057535 aatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaa 43057634  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  43057635 aatcttgaaaatcctaattgaat 43057657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 42678006 - 42678098
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttg 170  Q
    ||||| ||||||||||||||| ||||||||| | |  ||| |||||||| ||||||  | |||||||||||||||  |||| ||| |||||||    
T  42678006 atttttaactaaaaagtctcataaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagttg 42678098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 27418532 - 27418618
Alignment:
Q  155 gacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| |||||||  ||||||||||||||||||||    
T  27418532 gacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaatcctaattgaat 27418618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 30110997 - 30110911
Alignment:
Q  155 gacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| |||||||  ||||||||||||||||||||    
T  30110997 gacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaatcctaattgaat 30110911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 47914947 - 47915033
Alignment:
Q  155 gacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| |||||||  ||||||||||||||||||||    
T  47914947 gacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaatcctaattgaat 47915033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 37042383 - 37042499
Alignment:
Q  84 aactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||| |||||||||||||||  |  |||| ||| |||| ||||||||  ||||||||||||||   || ||||| ||||||||   || |||| |    
T  37042383 aactaaaaa-tctcacaaaatccatttcgccaaagaattcatttaaatctatgtatttttgaataccatgagataatttataagttgtgagaaatcttaa 37042481  T
Q  184 ttgaataccaccggattt 201  Q
    |||||||| |||||||||    
T  37042482 ttgaatactaccggattt 37042499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 41827311 - 41827259
Alignment:
Q  142 ttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccac 194  Q
    |||||||||| | |||  ||||||||||| | |||||||||||||||||||||    
T  41827311 ttgaataccacaagactttttttaagttgcaaaaattcttgattgaataccac 41827259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 9191458 - 9191239
Alignment:
Q  22 gagtaagaagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataat 121  Q
    |||||| |||||||||| |||||||||||| ||||||| ||| ||||| ||||| |||||| || |||||| ||||||||||||||| | | ||| ||||    
T  9191458 gagtaaaaagagtctcaagaaatctcatgtctttgtatgagaatgttacttttacaattttaaaataaaaaatctcacaaaatccattctaccaagtaat 9191359  T
Q  122 ccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatc 221  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||||  || |||||||||||||||||| ||||||| | |||||||||||||      
T  9191358 ccattgaaatcaatacatttttgaataccaagagacaatttttaagttgtaataaatcttgattgaataccaccagattttgttggactctttaaaaaat 9191259  T
Q  222 cttgaaaatcctaattgaat 241  Q
    | | ||||||||||||||||    
T  9191258 cattaaaatcctaattgaat 9191239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 49459903 - 49460025
Alignment:
Q  21 ggagtaagaagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataa 120  Q
    ||||||| |||| |||||  | |||||| || ||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||   ||||| |||    
T  49459903 ggagtaaaaagaatctcaacatatctcaggtctttatatgagattgctagttttaaaattttcaactaaaaagtctcacaaaatccattatatcaagtaa 49460002  T
Q  121 tccattgaaatctatacattttt 143  Q
    ||||||||||||||||| |||||    
T  49460003 tccattgaaatctatacgttttt 49460025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 1928224 - 1928380
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||||||||||||||||||  | ||| || |||||||| |||||  || | |||||||||||||  |||||||||||||||||  ||| |||  |    
T  1928224 actaaaaagtctcacaaaatccattac-tcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaa 1928322  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||| |||||||  | ||||| |||||||  ||||||||||||||||||||    
T  1928323 ttgaataccactggattttattggactcattaaaaaatcttgaaaatcctaattgaat 1928380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 36402511 - 36402355
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||||||||||||||||||  | ||| || |||||||| |||||  |||| |||||||||||||  |||||||||||||||||  ||| |||  |    
T  36402511 actaaaaagtctcacaaaatccattac-tcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaa 36402413  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||| |||||||  | ||||| |||||||  | ||||||||||||||||||    
T  36402412 ttgaataccactggattttattggactcattaaaaaatcctgaaaatcctaattgaat 36402355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 33243132 - 33243286
Alignment:
Q  87 taaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgatt 185  Q
    |||||||| |||||||||||||  | ||| || |||||||| |||||  |||| |||||||||||||  |||||||||||||||||| ||| |||  |||    
T  33243132 taaaaagtttcacaaaatccattac-tcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtacaaaatctcaatt 33243230  T
Q  186 gaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||| |||||||  |  |||| |||||||  ||||||||||||||||||||    
T  33243231 gaataccactggattttattgtactcattaaaaaatcttgaaaatcctaattgaat 33243286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 33263305 - 33263459
Alignment:
Q  87 taaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgatt 185  Q
    |||||||| |||||||||||||  | ||| || |||||||| |||||  |||| |||||||||||||  |||||||||||||||||| ||| |||  |||    
T  33263305 taaaaagtttcacaaaatccattac-tcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtacaaaatctcaatt 33263403  T
Q  186 gaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||| |||||||  |  |||| |||||||  ||||||||||||||||||||    
T  33263404 gaataccactggattttattgtactcattaaaaaatcttgaaaatcctaattgaat 33263459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 48194861 - 48194778
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatt 161  Q
    ||||| ||||||||||||||||||||||||| ||||| || |||||||  ||||||||| | ||||||||||||| ||||||||    
T  48194861 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaatt 48194778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 29209019 - 29208863
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||||||||||||||||||  | ||| || |||||||| |||||  || |  ||||||||||||  ||||||||||||||||| |||| |||  |    
T  29209019 actaaaaagtctcacaaaatccattac-tcacaacaatccattaaaatccttagaactttgaataccaatagacaatttttaagttgtgtaaaatctcaa 29208921  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||| | |||||||  | ||||| |||||||  | ||||||||||||||||||    
T  29208920 ttgaatacctctggattttattggactcattaaaaaatcctgaaaatcctaattgaat 29208863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 48203619 - 48203536
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatt 161  Q
    ||||| ||||||||||||||||||||||||| ||||| || |||||||  ||||||||| | ||||||||||| | ||||||||    
T  48203619 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaatacctatggacaatt 48203536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 10897009 - 10896908
Alignment:
Q  140 ttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattga 239  Q
    |||||||||||||  ||||||||||||||||   ||| |||  |||||||||||| |||||||  ||||||| |||||||  | ||||||||||||||||    
T  10897009 ttttgaataccaatagacaatttttaagttgggcaaaatctcaattgaataccactggattttattagactcattaaaaaatcctgaaaatcctaattga 10896910  T
Q  240 at 241  Q
    ||    
T  10896909 at 10896908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 19007393 - 19007476
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatt 161  Q
    ||||| ||||||||||||||||||||||||| ||||| || |||||||  ||||||||| | |||| ||||||||  |||||||    
T  19007393 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagactttttaataccaatagacaatt 19007476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 42657985 - 42657871
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaat 177  Q
    ||||| ||||||||||||||| ||||||||| ||||  || |||||||  |||||| || ||||||||||||||| ||||| ||| ||||||||  |||     
T  42657985 atttttaactaaaaagtctcataaaatccattccatagaagaatccatcaaaatct-tagatttttgaataccaatggacattttataagttgtgaaaaa 42657887  T
Q  178 tcttgattgaatacca 193  Q
    || | |||||||||||    
T  42657886 tcctaattgaatacca 42657871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 26882680 - 26882802
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||| || | ||||||||||||   ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| ||||||    
T  26882680 aatccattaaaatctgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaa 26882779  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  26882780 aatcttgaaaatcctaattgaat 26882802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 27198542 - 27198462
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggaca 158  Q
    ||||| |||||| ||||||||||||||| |  | || ||| |||||||| ||||||||| ||||||||||||||| |||||    
T  27198542 atttttaactaagaagtctcacaaaatcaactctataaaagaatccattaaaatctatatatttttgaataccaatggaca 27198462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 52705623 - 52705501
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | ||||||||||||   ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| ||||||    
T  52705623 aatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaa 52705524  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  52705523 aatcttgaaaatcctaattgaat 52705501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 14555131 - 14555208
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaattt 162  Q
    |||||||||||||||||||||||| | ||| || ||| |||  ||||||||| | |||||||||||||  ||||||||    
T  14555131 actaaaaagtctcacaaaatccattcaatccaagaattcatcaaaatctatagacttttgaataccaagagacaattt 14555208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 14228883 - 14228945
Alignment:
Q  87 taaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaatac 149  Q
    ||||||||||||||||||||||  |||| || |||||||  ||||||||| | ||||||||||    
T  14228883 taaaaagtctcacaaaatccatttcatccaaaaatccatcaaaatctatagacttttgaatac 14228945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 4289196 - 4289131
Alignment:
Q  86 ctaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaatacca 151  Q
    ||||||| ||||||||||||||  |||| ||| |||||||| |||||| || | ||||||||||||    
T  4289196 ctaaaaattctcacaaaatccactccataaaagaatccattaaaatctgtatacttttgaatacca 4289131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 9831504 - 9831420
Alignment:
Q  135 tacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaa 219  Q
    |||| |||||||||||||  |||||||| ||||||||  ||| |||  |||||||||||| |||||||  | ||||| |||||||    
T  9831504 tacaattttgaataccaatagacaatttgtaagttgtgcaaaatctcaattgaataccactggattttattggactcattaaaaa 9831420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 29 - 241
Target Start/End: Complemental strand, 35165124 - 35164912
Alignment:
Q  29 aagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattga 128  Q
    |||||||| | ||||||||| ||  || ||| ||||||||||||||||||||||||||||||||||||||||||||| ||   || ||  ||| |||| |    
T  35165124 aagagtcttaagaaatctcaagtccttatatgagattgttagttttaaaattttcaactaaaaagtctcacaaaatctattatattaaggaattcattaa 35165025  T
Q  129 aatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaa 228  Q
    |||||||| ||||||||||| ||||||| |||||||||||||   ||| |||||||| |||||||||  |||||| | |||||||||||||| | |||||    
T  35165024 aatctatatatttttgaataacaaaggataatttttaagttgagaaaaatcttgatttaataccaccaaattttgttggactctttaaaaatgcctgaaa 35164925  T
Q  229 atcctaattgaat 241  Q
    ||| |||||||||    
T  35164924 atcttaattgaat 35164912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 30878116 - 30877960
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||||||||||||||||||  | ||| || |||||||| |||||  || | |||||||||||||  ||||||||||||| |||| ||| |||  |    
T  30878116 actaaaaagtctcacaaaatccattac-tcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagctgtacaaaatctgaa 30878018  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    |||||||||||  ||||||  | ||||| |||||||  ||||||||||||||||||||    
T  30878017 ttgaataccactagattttattggactcattaaaaaatcttgaaaatcctaattgaat 30877960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 7100435 - 7100352
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatt 161  Q
    ||||| ||||||||||||||||||||||||| ||||| || |||||||  ||||||||| | ||||||||||||| ||||||||    
T  7100435 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaatt 7100352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 8794195 - 8794278
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatt 161  Q
    ||||| ||||||||||||||||||||||||| ||||| || |||||||  ||||||||| | ||||||||||||| ||||||||    
T  8794195 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaatt 8794278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 10643832 - 10643990
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgt-at-aaattctt 181  Q
    ||||||||||||||||||||||||  | ||| || |||||||| |||||  |||| |||||| ||||||  ||||||||||||||||| || ||| |||     
T  10643832 actaaaaagtctcacaaaatccattac-tcacaacaatccattaaaatccttacaattttgattaccaatagacaatttttaagttgtgatcaaaatctc 10643930  T
Q  182 gattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
     |||||||||||| |||||||  | ||||| |||||||  | ||||||||||||||||||    
T  10643931 aattgaataccactggattttattggactcattaaaaaatcctgaaaatcctaattgaat 10643990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 709185 - 709102
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatt 161  Q
    ||||| |||||||||||||||||||||||||  |||| || |||||||  ||||||||| | |||||||||||||  |||||||    
T  709185 atttttaactaaaaagtctcacaaaatccattacatccaagaatccatcaaaatctatagacttttgaataccaatagacaatt 709102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 6476603 - 6476689
Alignment:
Q  155 gacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||||| |  ||| |||  |||||||||||| |||||||  | ||||| |||||||  ||||||||||||||||||||    
T  6476603 gacaatttttaagttatgcaaaatctcaattgaataccactggattttattggactcattaaaaaatcttgaaaatcctaattgaat 6476689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 107
Target Start/End: Original strand, 31609506 - 31609535
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatcca 107  Q
    ||||||||||||||||||||||||||||||    
T  31609506 attttcaactaaaaagtctcacaaaatcca 31609535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 32 - 234
Target Start/End: Original strand, 24296419 - 24296621
Alignment:
Q  32 agtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaat 131  Q
    ||||||| |||||||||||| |||| || |||||||||||||||||||||||||||||||||||| ||||||||||| | | |||| |||||||| ||||    
T  24296419 agtctcaagaaatctcatgtctttgcatgagattgttagttttaaaattttcaactaaaaagtcttacaaaatccattctaccaaagaatccattaaaat 24296518  T
Q  132 ctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatc 231  Q
    ||||||||||||||||| |||  ||| ||||||||||| |  || || || ||||||||||| | ||||||  |  ||||||||||||  | ||||||||    
T  24296519 ctatacatttttgaatatcaagagactatttttaagttatgaaatttttttattgaataccatcagattttattgaactctttaaaaaatcatgaaaatc 24296618  T
Q  232 cta 234  Q
    |||    
T  24296619 cta 24296621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 38806685 - 38806861
Alignment:
Q  20 gggagtaagaagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaata 119  Q
    |||||||| || | |||||  |||||||| || ||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||||   |  ||  |    
T  38806685 gggagtaaaaaaaatctcaaaaaatctcaagtctttatatgagattgttagttttaaaattttcaactaaaatgtctcacaatatccattatagtaagga 38806784  T
Q  120 atccattgaaatctatacatttttgaataccaaaggacaatttttaagtt-gtataaattcttgattgaataccacc 195  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||| |   ||| ||||||||||||||||||    
T  38806785 atccattgaaatctatacatttttgaataccaacagataatttttaagttcgagaaaaatcttgattgaataccacc 38806861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 14723726 - 14723867
Alignment:
Q  23 agtaagaagagtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatc 122  Q
    ||||| ||| |||||| |||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||| ||||| ||| | | | ||| |||||    
T  14723726 agtaaaaagggtctcaagaaatctcatgtgtttgtatgagattgttagttttaaaaattttaactaaaaagtcttacaaattcccttctaccaagtaatc 14723825  T
Q  123 cattgaaatctatacatttttgaataccaaaggacaattttt 164  Q
    ||||||| ||||||  ||||| ||||||||  ||||||||||    
T  14723826 cattgaagtctatattttttttaataccaagagacaattttt 14723867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 35142251 - 35142150
Alignment:
Q  140 ttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattga 239  Q
    |||||||||||||  |||||||||||||||||| ||| |||| ||||||||| ||||||||||  | ||||| |||||||  ||||||||||||||||||    
T  35142251 ttttgaataccaatagacaatttttaagttgtacaaaatcttaattgaatacgaccggattttattggactcattaaaaaatcttgaaaatcctaattga 35142152  T
Q  240 at 241  Q
    ||    
T  35142151 at 35142150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 8502896 - 8502740
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    |||||||||||||| |||||||||  | ||| || |||||||| |||||  || | |||| ||||||||  |||||||||||||||||  ||| |||| |    
T  8502896 actaaaaagtctcataaaatccattac-tcacaacaatccattaaaatccgtagaattttaaataccaatagacaatttttaagttgtgcaaaatcttaa 8502798  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    |||||||||||||||||||  | ||||| || ||||  ||||||||||||||||||||    
T  8502797 ttgaataccaccggattttattggactcattcaaaaatcttgaaaatcctaattgaat 8502740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 23185928 - 23185805
Alignment:
Q  118 taatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaa 217  Q
    ||||| ||||| |||||||||||||| |||||||   |||||||||||||||||  ||| | |||||||||||||||| ||||||  | ||  || ||||    
T  23185928 taatctattgagatctatacattttttaataccaggagacaatttttaagttgtgaaaaattttgattgaataccaccagattttattggatcctataaa 23185829  T
Q  218 aatccttgaaaatcctaattgaat 241  Q
    | |  |||||||||||||||||||    
T  23185828 attttttgaaaatcctaattgaat 23185805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 24318187 - 24318094
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgt 171  Q
    ||||| ||| ||||||||||||||||||||| |||| ||| |||||||  ||||||||  ||||||||||||| || |||| ||| ||||||||    
T  24318187 atttttaaccaaaaagtctcacaaaatccattccataaaagaatccatcaaaatctatcaatttttgaataccgaaagacattttataagttgt 24318094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 30382528 - 30382650
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  |||| |||||||||||||  |||||||||||||||||  ||| |||  |||||||||||| |||||||  |  |||  ||||||    
T  30382528 aatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggattttattgaactaattaaaa 30382627  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  | ||||||||||||||||||    
T  30382628 aatcatgaaaatcctaattgaat 30382650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 40265135 - 40265257
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| ||||| ||| | ||||||||||||   ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| ||||||    
T  40265135 aatccattaaaatccatagagttttgaataccattagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaa 40265234  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  40265235 aatcttgaaaatcctaattgaat 40265257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 4302662 - 4302784
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  |||| |||||||||| ||  |||||||||||||||||  ||| |||  |||||||||||  | |||||  | ||||| ||||||    
T  4302662 aatccattaaaatccttacaattttgaatactaatagacaatttttaagttgtgcaaaatctcaattgaataccattgaattttattggactcattaaaa 4302761  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  | ||||||||||||||||||    
T  4302762 aatcctgaaaatcctaattgaat 4302784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 37567192 - 37567326
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||| ||||||||||||||  | ||| || ||| |||| |||||  |||| |||||||||||||  |||||||||||||||||  ||| |||  |    
T  37567192 actaaaaagcctcacaaaatccattac-tcacaacaattcattaaaatccgtacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaa 37567290  T
Q  184 ttgaataccaccggattttggtagactctttaaaaa 219  Q
    |||||||| || |||||||  | ||||| |||||||    
T  37567291 ttgaatactactggattttattggactcattaaaaa 37567326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 2113021 - 2112899
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | ||||||||||||   ||||||||||||||| |   || |||  |||||||||||| ||||||   | ||||| ||||||    
T  2113021 aatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcgaaatctcaattgaataccactggatttcattggactcattaaaa 2112922  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  2112921 aatcttgaaaatcctaattgaat 2112899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 10802661 - 10802747
Alignment:
Q  155 gacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| |||||||  ||||||||||||||||||||    
T  10802661 gacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaatcctaattgaat 10802747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 29260130 - 29260252
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | ||||||||||||   ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| ||||||    
T  29260130 aatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcgttaaaa 29260229  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  || |||||||||||||||||    
T  29260230 aatctcgaaaatcctaattgaat 29260252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 41386760 - 41386846
Alignment:
Q  155 gacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| |||||||  ||||||||||||||||||||    
T  41386760 gacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaatcctaattgaat 41386846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 9209245 - 9209144
Alignment:
Q  140 ttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattga 239  Q
    |||||||||||||  |||||||||||||||||  ||| | |  |||||||||||| |||||||  |  |||| |||||||  | |||||||| |||||||    
T  9209245 ttttgaataccaatagacaatttttaagttgtccaaaatttcaattgaataccactggattttattgaactcattaaaaaatcctgaaaatcttaattga 9209146  T
Q  240 at 241  Q
    ||    
T  9209145 at 9209144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 39038937 - 39039010
Alignment:
Q  79 ttttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaa 152  Q
    |||| ||||||||||||||||||||| |||   |  ||| |||||||| |||| |||| |||||||||||||||    
T  39038937 tttttaactaaaaagtctcacaaaattcattatacaaaagaatccattaaaatttatagatttttgaataccaa 39039010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 32497486 - 32497434
Alignment:
Q  142 ttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccac 194  Q
    |||||||||| | |||  ||||||||||||| ||| |||||||||||||||||    
T  32497486 ttgaataccacaagactttttttaagttgtaaaaagtcttgattgaataccac 32497434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 5117279 - 5117069
Alignment:
Q  32 agtctcaggaaatctcatgtatttgtataagattgttagttttaaaattttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaat 131  Q
    ||||||| ||||||| | || ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |  ||  |||||||||||||    
T  5117279 agtctcaagaaatcttaagtctttgtatgagattgttagttttaaaatttttaactaaaaagtctcacaaaatccattctactaaggaatccattgaaat 5117180  T
Q  132 ctataca-tttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaat 230  Q
    ||||||| ||||| ||||| ||  ||||||||||||||||   ||| ||||||| ||||||||||||||||   |  ||||||||||||  | |||||||    
T  5117179 ctatacatttttttaatactaagagacaatttttaagttgcgaaaaatcttgatggaataccaccggatttcattgaactctttaaaaagtcctgaaaat 5117080  T
Q  231 cctaattgaat 241  Q
    | |||||||||    
T  5117079 cttaattgaat 5117069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 33449999 - 33450155
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||| ||||||||||||||||  | ||| ||||||||||| |||||  || | |||||||||||||  |||||||||||||||||  ||| |||  |    
T  33449999 actaaaatgtctcacaaaatccattac-tcacaataatccattaaaatccgtagaattttgaataccaatagacaatttttaagttgtgcaaaatctcaa 33450097  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||| |||||  | ||||| |||||||  ||||||||||||||||||||    
T  33450098 ttgaataccaccgaattttattggactcattaaaaaatcttgaaaatcctaattgaat 33450155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 37370700 - 37370793
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgt 171  Q
    ||||| ||||| ||||||||||||||||||| |||| ||| |||||||| ||||||||  ||||||||||||| ||||||| ||| ||||||||    
T  37370700 atttttaactataaagtctcacaaaatccattccataaaagaatccattaaaatctatcaatttttgaataccgaaggacattttataagttgt 37370793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 54509975 - 54509822
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgat 184  Q
    |||||||||||||||||||||||| | ||  || |||||||| |||||  |||| |||||||||||||  |||||||||||||||||  ||| |||  ||    
T  54509975 actaaaaagtctcacaaaatccattc-at--aacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaat 54509879  T
Q  185 tgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    |||||||||| |||||||  | ||||| |||||||    ||||||||||||||||||    
T  54509878 tgaataccactggattttattggactcattaaaaaattatgaaaatcctaattgaat 54509822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 38231043 - 38230960
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatt 161  Q
    ||||| ||||||||||||||||||||||||| ||||| || |||||||  ||||||||| | ||||||||||||| ||||||||    
T  38231043 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaatt 38230960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 28846922 - 28846998
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatt 161  Q
    |||||||||||| ||||||||||||| ||| || |||||||  ||||||||| ||||||||||||||| ||||||||    
T  28846922 actaaaaagtcttacaaaatccatccaatccaaaaatccatcaaaatctatagatttttgaataccaatggacaatt 28846998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 201
Target Start/End: Original strand, 28100395 - 28100518
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaat 177  Q
    ||||| |||||||||||||| |||||||||| |||| ||| |||||||  ||||||||  |||||||||||| ||| |||| ||| ||||||||   ||     
T  28100395 atttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatctattaatttttgaatactaaaagacattttataagttgtgagaaa 28100494  T
Q  178 tcttgattgaataccaccggattt 201  Q
    |||| |||||||| || |||||||    
T  28100495 tcttaattgaatatcaacggattt 28100518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 45332896 - 45332774
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | |||||||||||||  ||||||||||||||||| |||| |||  |||||||||| | |||||||  | ||||| ||||||    
T  45332896 aatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacctctggattttattggactcattaaaa 45332797  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  | ||||||||||||||||||    
T  45332796 aatcctgaaaatcctaattgaat 45332774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 47685374 - 47685252
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  |||| |||||||||||||  ||||||||||||||||   ||| |||  |||||||||||| | |||||  | ||||| ||||||    
T  47685374 aatccattaaaatccttacaattttgaataccaatagacaatttttaagttgagcaaaatctcaattgaataccactgaattttattggactcattaaaa 47685275  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  47685274 aatcttgaaaatcctaattgaat 47685252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 42720983 - 42720827
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||||||||||||||||||  | ||| || || ||||| |||||  || | |||||||||||||  ||||||||||||||||| |||| |||  |    
T  42720983 actaaaaagtctcacaaaatccattac-tcacaacaacccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaa 42720885  T
Q  184 ttgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||| | |||||||  | ||||| |||||||    ||||||||||||||||||    
T  42720884 ttgaatacctctggattttattggactcattaaaaaattctgaaaatcctaattgaat 42720827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 26336332 - 26336198
Alignment:
Q  85 actaaaaagtctcacaaaatccatcccatca-aataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttga 183  Q
    ||||||||||||||||||||||||  | ||| ||||||||||| |||||  || | |||||||||||||   |||||||||||||||| |||| |||  |    
T  26336332 actaaaaagtctcacaaaatccattac-tcacaataatccattaaaatccttagaattttgaataccaataaacaatttttaagttgtgtaaaatctcaa 26336234  T
Q  184 ttgaataccaccggattttggtagactctttaaaaa 219  Q
    ||||||||| | |||||||  | ||||| |||||||    
T  26336233 ttgaatacctctggattttattggactcattaaaaa 26336198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 45340586 - 45340464
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | |||||||||||||  ||||||||||||||||| |||| |||  |||||||||| | |||||||  | ||||| ||||||    
T  45340586 aatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacctctggattttattggactcattaaaa 45340487  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |    ||||||||||||||||||    
T  45340486 aattctgaaaatcctaattgaat 45340464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 53594347 - 53594234
Alignment:
Q  88 aaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattga 187  Q
    ||||||||||||||||||||| |||| ||| |||||||  ||||||||  |||||| |||||| || |||| ||| ||||||||   || || | |||||    
T  53594347 aaaaagtctcacaaaatccattccataaaaaaatccatcaaaatctatcaattttttaataccgaaagacattttataagttgtgagaaatcctaattga 53594248  T
Q  188 ataccaccggattt 201  Q
    |||||| |||||||    
T  53594247 ataccaacggattt 53594234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 8583859 - 8583981
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | ||||||||||||   ||||||||||||||| |  ||| |||| |||||||||||| | ||||   | ||||| ||||||    
T  8583859 aatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatcttaattgaataccactgaatttcattggactcgttaaaa 8583958  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  8583959 aatcttgaaaatcctaattgaat 8583981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 8880638 - 8880552
Alignment:
Q  155 gacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| |||||||  ||||||||||||||||||||    
T  8880638 gacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaatcctaattgaat 8880552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 40143990 - 40143884
Alignment:
Q  135 tacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatccta 234  Q
    |||| |||||||||||||  |||||||||||||||||  ||| |||  |||||||||| | | |||||  | ||||  |||||||  | |||||||||||    
T  40143990 tacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatacctctgaattttattggacttattaaaaaatcatgaaaatccta 40143891  T
Q  235 attgaat 241  Q
    |||||||    
T  40143890 attgaat 40143884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 42218336 - 42218422
Alignment:
Q  155 gacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattgaat 241  Q
    ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| |||||||  ||||||||||||||||||||    
T  42218336 gacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaatcctaattgaat 42218422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 53272172 - 53272106
Alignment:
Q  86 ctaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaa 152  Q
    ||||||||||||||||||||||  |||| ||| |||||||| |||| | || | |||||||||||||    
T  53272172 ctaaaaagtctcacaaaatccactccataaaagaatccattaaaatatgtatacttttgaataccaa 53272106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 11610 - 11732
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaat 177  Q
    ||||| |||||||||||||| |||||||||| |||| ||| |||||||  ||||| ||  ||||||||||||||||  ||| ||| ||||||||   ||     
T  11610 atttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatcaattaatttttgaataccaaaatacattttataagttgtgagaaa 11709  T
Q  178 tcttgattgaataccaccggatt 200  Q
    |||| ||||||||||| ||||||    
T  11710 tcttaattgaataccaacggatt 11732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 16417 - 16518
Alignment:
Q  140 ttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaaatccttgaaaatcctaattga 239  Q
    |||||||||| ||  ||||||||||||||| |  ||| |||  |||||||||||| |||||||  | ||||| |||||||| ||||||||| ||||||||    
T  16417 ttttgaatactaatagacaatttttaagttatgcaaaatctcaattgaataccactggattttattggactcattaaaaattcttgaaaatactaattga 16516  T
Q  240 at 241  Q
    ||    
T  16517 at 16518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 1698 - 1790
Alignment:
Q  78 attttcaactaaaaagtctcacaaaatccatcccatcaaataatccattgaaatctatacatttttgaataccaaaggacaatttttaagttg 170  Q
    ||||| ||||||||||||||||||||||||| | |  ||| |||||||| ||||||  | |||||||||||||||  |||| ||| |||||||    
T  1698 atttttaactaaaaagtctcacaaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagttg 1790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 81636 - 81758
Alignment:
Q  119 aatccattgaaatctatacatttttgaataccaaaggacaatttttaagttgtataaattcttgattgaataccaccggattttggtagactctttaaaa 218  Q
    |||||||| |||||  || | ||||||||||||   ||||||||||||||| |  ||| |||  |||||||||||| ||||||   | ||||| ||||||    
T  81636 aatccattaaaatccgtagagttttgaataccaggagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaa 81735  T
Q  219 atccttgaaaatcctaattgaat 241  Q
    |  ||||||||||||||||||||    
T  81736 aatcttgaaaatcctaattgaat 81758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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