View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18530_low_2 (Length: 521)
Name: NF18530_low_2
Description: NF18530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18530_low_2 |
 | |
|
| [»] scaffold0854 (2 HSPs) |
| | |
|
| [»] scaffold1344 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Original strand, 18031352 - 18031817
Alignment:
| Q |
19 |
gatagatagattctctaaattgttcagagagtccaagaagattgaaccgttgcacaattcttccaatttcttcatacccttgagctttagtacaattaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18031352 |
gatagatagattctctaaattgttcagagagtccaagaagattgaaccgttgcacaattcttccaatttcttcatacccttgagctttagtacaattaac |
18031451 |
T |
|
| Q |
119 |
ttggagnnnnnnncatttggtacttgagaatcaatatgtttagtgtctatgagtaacttcagttctgtatcatcttccaagtgaagctcaagaagatcat |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18031452 |
ttggagaaaaaaacatttggtacttgagaatcaatatgtttagtgtctatgagtaacttcagttctgtatcatcttccaagtgaagctcaagaagatcat |
18031551 |
T |
|
| Q |
219 |
tcataccattttctataggaaccatctctggcatgagatttctccatccactgttaatttgacatcgccgaagaatctcttgtacttccatacagtactt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18031552 |
tcataccattttctataggaaccatctctggcatgagatttctccatccactgttaatttgacatcgccgaagaatctcttgtacttccatacagtactt |
18031651 |
T |
|
| Q |
319 |
gggttcatagtctttgtggcattgcagttctgaaatgtaatgttcaccaggttcatctttaacaagttcatcaatctttgccaagagatgtccgaaatca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18031652 |
gggttcatagtctttgtggcattgcagttgtgaaatgtaatgttcaccaggttcatctttaacaagttcatcaatctttgccaagagatgtccgaaatca |
18031751 |
T |
|
| Q |
419 |
cgctcaaatttagttcgtcgaagatcctctgttgttttcctacaatacttgtattcagtgtctgtg |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18031752 |
cgctcaaatttagttcgtcgaagatcctctgttgttttcctacaatacttgtattcagtgtctgtg |
18031817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 40 - 277
Target Start/End: Original strand, 27401318 - 27401555
Alignment:
| Q |
40 |
gttcagagagtccaagaagattgaaccgttgcacaattcttccaatttcttcatacccttgagctttagtacaattaacttggagnnnnnnncatttggt |
139 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||||||||||||||| || | ||| ||||| |||||||| ||||||||| |||||||| |
|
|
| T |
27401318 |
gttcagagagtccatggagatggaaccgttgcacaattcttccaacttatccattttaaagagctctagtacaaccaacttggagaagacaacatttggt |
27401417 |
T |
|
| Q |
140 |
acttgagaatcaatatgtttagtgtctatgagtaacttcagttctgtatcatcttccaagtgaagctcaagaagatcattcataccattttctataggaa |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||| | | | || |||||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
27401418 |
acttgagaatcaatatgtttagtgtctatgaggcactgtagttctgaaccccatgacaggtgaagcttaacaagatcattcatgccattttctataggaa |
27401517 |
T |
|
| Q |
240 |
ccatctctggcatgagatttctccatccactgttaatt |
277 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
27401518 |
ccacctcaggcatgagatttctccatccactgttaatt |
27401555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 18081285 - 18081417
Alignment:
| Q |
135 |
ttggtacttgagaatcaatatgtttagtgtctatgagtaacttcagttctgtatcatcttccaagtgaagctcaagaagatcattcataccattttctat |
234 |
Q |
| |
|
|||||||||||||||||||||||| | ||| |||||| ||| |||| || ||||| || ||| |||||||||| |||||||||||||| | ||||| |
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|
| T |
18081285 |
ttggtacttgagaatcaatatgttcaatgtatatgaggtactgtagttgtgaatcatatttcaaatgaagctcaattagatcattcataccttgatctat |
18081384 |
T |
|
| Q |
235 |
aggaaccatctctggcatgagatttctccatcc |
267 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |
|
|
| T |
18081385 |
aggaacaatttctggcatgagatttctccatcc |
18081417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 26183797 - 26183866
Alignment:
| Q |
192 |
cttccaagtgaagctcaagaagatcattcataccattttctataggaaccatctctggcatgagatttct |
261 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
26183797 |
cttccaaatgaagctcaattagatcattcataccttgttctataggaaccatctctggcatgagatttct |
26183866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 26212404 - 26212473
Alignment:
| Q |
192 |
cttccaagtgaagctcaagaagatcattcataccattttctataggaaccatctctggcatgagatttct |
261 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| | || |||||||||||||||||||||||||||||| |
|
|
| T |
26212404 |
cttccaaatgaagctcaattagatcattcataccttgttttataggaaccatctctggcatgagatttct |
26212473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 267
Target Start/End: Original strand, 26117195 - 26117428
Alignment:
| Q |
31 |
ctctaaattgttcagagagtccaagaagattgaaccgttgcacaattcttccaatttcttcatacccttgagctttagtacaattaacttggagnnnnnn |
130 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| | ||| ||||| ||||||||||| | ||| | ||| ||||||||||||| ||||||||| |
|
|
| T |
26117195 |
ctctaaattgttcattgagtcaaaggagatgggaccattgcataattcttccaaagcttccattctcttaagctttagtacaaccaacttggagaaaa-- |
26117292 |
T |
|
| Q |
131 |
ncatttggtacttgagaatcaatatgtttagtgtctatgagtaacttcagttctgtatcatcttccaagtgaagctcaagaagatcattcataccatttt |
230 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||| || ||| |||| || | ||| |||| |||||||| |||||||||||||| | | |
|
|
| T |
26117293 |
-caattggtacttgagaattaatatgtttagtgtctacaaggcactgtagttgtgaaatttctcccaaacaaagctcaattagatcattcataccttcat |
26117391 |
T |
|
| Q |
231 |
ctataggaaccatctctggcatgagatttctccatcc |
267 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
26117392 |
ctataggaacaatctctggcatgagatttatccatcc |
26117428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 27370423 - 27370330
Alignment:
| Q |
31 |
ctctaaattgttcagagagtccaagaagattgaaccgttgcacaattcttccaatttcttcatacccttgagctttagtacaattaacttggag |
124 |
Q |
| |
|
|||||||||||||| |||||| ||||||| | ||| ||||| ||||||||||| |||||||| ||||||| |||||||||| ||||||||| |
|
|
| T |
27370423 |
ctctaaattgttcatagagtcagagaagatgggaccattgcataattcttccaaattcttcatttccttgagttttagtacaaccaacttggag |
27370330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 26145300 - 26145432
Alignment:
| Q |
135 |
ttggtacttgagaatcaatatgtttagtgtctatgagtaacttcagttctgtatcatcttccaagtgaagctcaagaagatcattcataccattttctat |
234 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||| |||| || | ||| || |||||||||| |||||||||||||| | ||||| |
|
|
| T |
26145300 |
ttggtacttgagaattaatatgtttagtgtctactaggcactgtagttgtgaaatttctctcagatgaagctcaattagatcattcataccttgatctat |
26145399 |
T |
|
| Q |
235 |
aggaaccatctctggcatgagatttctccatcc |
267 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |
|
|
| T |
26145400 |
aggaaccatctcgggcatgagatttctacatcc |
26145432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 26239560 - 26239692
Alignment:
| Q |
135 |
ttggtacttgagaatcaatatgtttagtgtctatgagtaacttcagttctgtatcatcttccaagtgaagctcaagaagatcattcataccattttctat |
234 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||| |||| || | |||| || ||||||| || |||||||||||||| | ||||| |
|
|
| T |
26239560 |
ttggtacttgagaattaatatgtttagtgtctacaaggtactgtagttgtgaaatttctttcagatgaagcttaattagatcattcataccttcatctat |
26239659 |
T |
|
| Q |
235 |
aggaaccatctctggcatgagatttctccatcc |
267 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| |
|
|
| T |
26239660 |
aggaacaatctctggcatgagatttatccatcc |
26239692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 26624465 - 26624398
Alignment:
| Q |
200 |
tgaagctcaagaagatcattcataccattttctataggaaccatctctggcatgagatttctccatcc |
267 |
Q |
| |
|
|||||||||| || |||||||||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26624465 |
tgaagctcaacaatatcattcatacctagttctataggaacaatctcaggcatgagatttctccatcc |
26624398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 18723482 - 18723537
Alignment:
| Q |
212 |
agatcattcataccattttctataggaaccatctctggcatgagatttctccatcc |
267 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||| | |||||||||||||||||||| |
|
|
| T |
18723482 |
agatcattcataccattatctatagaaacaatcccaggcatgagatttctccatcc |
18723537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 27370255 - 27370190
Alignment:
| Q |
202 |
aagctcaagaagatcattcataccattttctataggaaccatctctggcatgagatttctccatcc |
267 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
27370255 |
aagctcaattagattattcataccattatctataggaagaatcccaggcatgagatttctccatcc |
27370190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 27343947 - 27343892
Alignment:
| Q |
212 |
agatcattcataccattttctataggaaccatctctggcatgagatttctccatcc |
267 |
Q |
| |
|
||||||||||||||||| || ||||||| ||| | |||||||||||||||||||| |
|
|
| T |
27343947 |
agatcattcataccattatccataggaagaatcccaggcatgagatttctccatcc |
27343892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 28079554 - 28079459
Alignment:
| Q |
29 |
ttctctaaattgttcagagagtccaagaagattgaaccgttgcacaattcttccaatttcttcatacccttgagctttagtacaattaacttggag |
124 |
Q |
| |
|
||||||||| ||||||||||||| ||| | | | ||| ||| ||||||||||||| || | ||| || |||||||||||||||| ||||||||| |
|
|
| T |
28079554 |
ttctctaaactgttcagagagtcaaaggaaagaggaccattgaacaattcttccaaattatccattcctttgagctttagtacaaccaacttggag |
28079459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 4343 - 4449
Alignment:
| Q |
18 |
agatagatagattctctaaattgttcagagagtccaagaagattgaaccgttgcacaattcttccaatttcttcatacccttgagctttagtacaattaa |
117 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||||| |||||||| | ||| ||||| ||||||||||| |||||||| ||||||| | |||||||| || |
|
|
| T |
4343 |
agatagttagctcctctaaattgttcatagagtcaaagaagatgggaccattgcataattcttccaaattcttcatttccttgagttctagtacaaccaa |
4442 |
T |
|
| Q |
118 |
cttggag |
124 |
Q |
| |
|
||||||| |
|
|
| T |
4443 |
cttggag |
4449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 4534 - 4589
Alignment:
| Q |
212 |
agatcattcataccattttctataggaaccatctctggcatgagatttctccatcc |
267 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
4534 |
agataattcataccattatctataggaacaatcccaggcatgagatttctccatcc |
4589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1344 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1344
Description:
Target: scaffold1344; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 634 - 579
Alignment:
| Q |
212 |
agatcattcataccattttctataggaaccatctctggcatgagatttctccatcc |
267 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
634 |
agatcattcataccattatctataggaataatcccaggcatgagatttctccatcc |
579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 73306 - 73361
Alignment:
| Q |
212 |
agatcattcataccattttctataggaaccatctctggcatgagatttctccatcc |
267 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||| | |||||||||||||||||||| |
|
|
| T |
73306 |
agatcattcataccattatctatagaaacaatcccaggcatgagatttctccatcc |
73361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 8694815 - 8694882
Alignment:
| Q |
200 |
tgaagctcaagaagatcattcataccattttctataggaaccatctctggcatgagatttctccatcc |
267 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||||| ||||| || |||| |||||||||||| |
|
|
| T |
8694815 |
tgaagctcaactagatcattcataccatgatcgataggaacaatctcaggtatgatatttctccatcc |
8694882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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