View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18530_low_3 (Length: 462)
Name: NF18530_low_3
Description: NF18530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18530_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 444
Target Start/End: Original strand, 8639727 - 8640161
Alignment:
| Q |
12 |
atgaacctatttgcccaatttttgaatcaaaacaaaacttgttagaaagcacagaggggtagaagaagtgcataaacatagtagccttgggctgtaggca |
111 |
Q |
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| T |
8639727 |
atgaacctatttgcccaatttttgaatcaaaacaaaacttgttagaaagcacagaggggtagaagaagtgcataaacatagtagccttaggctgtaggca |
8639826 |
T |
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| Q |
112 |
cttgaatnnnnnnnnnnnnnntagttagtgatgagtgatgactaacaaacaaacaaaaatgaaaattcaaagcttttttccattgccaaatgcccaactc |
211 |
Q |
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| T |
8639827 |
cttgaataaaaaaagggggggtagttagtgatgagtgatgactaacaaacaaacaaaaatgaaaattcaaagcttttttccattgccaaatgcccaactc |
8639926 |
T |
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| Q |
212 |
cggattcctgagtacattgtgatactttatttgaaacgtaagtnnnnnnnnnnnnnnnnnn--tgaatgttagtaaattgtgaattcatgaccacctgct |
309 |
Q |
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| T |
8639927 |
tggattcctgagtacattgtgatactttatttgaaacgtaagtaaaaaaaattaaaaaaaaaatgaatgttagtaaattgtgaattcatggccacctgct |
8640026 |
T |
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| Q |
310 |
gtgctgaatgatgaatggatccggtagataaaataacggaataggtataagtatatagcaatgaatttaaagaaatcaatcagtttgaagttgaatgaaa |
409 |
Q |
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| T |
8640027 |
gtgctgaatgatgaatggatccggtagataaaataacggaataggtataagtatatagcaatgaatttaaagaaatcaatcagtttgaagttgaatgaaa |
8640126 |
T |
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| Q |
410 |
gaactggtcaaatgatgatgctggattcatctagt |
444 |
Q |
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| T |
8640127 |
gaactggtcaaatgatgatgctggattcatctagt |
8640161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 415
Target Start/End: Original strand, 35221116 - 35221227
Alignment:
| Q |
300 |
accacctgctgtgctgaatgatgaatggatccggtagataaaataac-ggaataggtataagtatatagcaatgaatttaaagaaatcaatcagtttgaa |
398 |
Q |
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| T |
35221116 |
accaactgctgtgctgaatgatgaa-ggacccagtggatcaagtaaatggaataggtataagtttatagcaatgaattaagagaaatcaa----tttgaa |
35221210 |
T |
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| Q |
399 |
gttgaatgaaagaactg |
415 |
Q |
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| T |
35221211 |
cttgaatgaaggaactg |
35221227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 35227231 - 35227301
Alignment:
| Q |
299 |
gaccacctgctgtgctgaatgatgaatggatccggtagataaaataacggaataggtataagtatatagcaa |
370 |
Q |
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| T |
35227231 |
gaccacctgctgtcctgaatgatgaa-agacccgatagaaagaataaccgaataggtataagtttatagcaa |
35227301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 35148331 - 35148383
Alignment:
| Q |
337 |
ataaaataacggaataggtataagtatatagcaatgaatttaaagaaatcaat |
389 |
Q |
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| T |
35148331 |
ataaaataatggaatgggtatatgtttatagcaatgaatttatataaatcaat |
35148383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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