View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18530_low_4 (Length: 421)
Name: NF18530_low_4
Description: NF18530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18530_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 261 - 374
Target Start/End: Original strand, 29864210 - 29864323
Alignment:
| Q |
261 |
tgatacaatctatatcagtattttgtaaacgcctatcgactcattcgagtctcctaagaattctttctttcatcttgaaaatattaccaaacacatatat |
360 |
Q |
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| T |
29864210 |
tgatacaatctatatcagtattttgtaaacgcctatcgactcattcaagtctcctaagaattctttctttcatcttgaaaatattaccaagcacatctat |
29864309 |
T |
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| Q |
361 |
attcctctacacaa |
374 |
Q |
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||||| |||||||| |
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| T |
29864310 |
attccactacacaa |
29864323 |
T |
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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 29849546 - 29849633
Alignment:
| Q |
17 |
agatgttaactttcgtatactaaaaagagcttgttttgtttcctcattag--taatgactattacggaaattaggaaaagattgaagag |
103 |
Q |
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||||||||||||| | |||||||||||||||||||||| |||||| ||| |||| |||||||||||||||||||||||||| ||||| |
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| T |
29849546 |
agatgttaacttttgcatactaaaaagagcttgttttg-ttcctccatagtataatcactattacggaaattaggaaaagatttaagag |
29849633 |
T |
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