View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18530_low_6 (Length: 349)
Name: NF18530_low_6
Description: NF18530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18530_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 24723767 - 24724081
Alignment:
| Q |
1 |
tcaaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagagatcacaaattacataaactttgcttatgatcgaacagtttgcaaattgc |
100 |
Q |
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| T |
24723767 |
tcaaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagagatcacaaattacataaacttttcttatgatcaaacagtttgcaaattgc |
24723866 |
T |
|
| Q |
101 |
accgtaaggattgcaattttaattctttcaaagcactcaaagtttttcgtggaaacagtccttgaaacaagaacattatatgagattaaacttagggctg |
200 |
Q |
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| T |
24723867 |
accgtaaggattgcaattt-aattctttcaaagcactcgaagtttttcgtggaaacagtccttgaaacaagaacattatatgcgattaaacttagggctg |
24723965 |
T |
|
| Q |
201 |
acttgattgtcagtgctagaaacctaagagtgtattcatctctgatatcggaattgaattccataaatgccaacaattcttgtgttgggtcggtccatcc |
300 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24723966 |
acttgatagtcagtgctagaaacctaagagtgtgttcatctctgatatcggaattgaattccataaatgccaacaattattgtgttgggtcggtccatcc |
24724065 |
T |
|
| Q |
301 |
aaagcttctctttagc |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
24724066 |
aaagcttctctttagc |
24724081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 21131630 - 21131955
Alignment:
| Q |
1 |
tcaaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagagatcacaaattacataaactttgcttatgatcgaacagtttgcaaattgc |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21131630 |
tcaaatctggcaactggaaatgtgatgatctttgatggtgtgcgttgagagatcacaaattacataaactttgcttatgatcaaacagtttgcaaattgc |
21131729 |
T |
|
| Q |
101 |
accgtaaggattgcaattttaattctttcaaagcactcaaagtttttcgtggaaacagtccttgaaacaagaacattatat----gagattaaacttagg |
196 |
Q |
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|||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| | ||||||||||| | |
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| T |
21131730 |
accgcaaggattgcaattt-aattctttcaaagcactcgaagttttttgtggaaacaatccttgaaacaagaacattatatatatgtgattaaacttatg |
21131828 |
T |
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| Q |
197 |
gctgacttgattgtcagtgctagaaacctaagagtgtattcatctctgatatcggaattgaattccataaatgccaacaattcttgtgttgggtcggtcc |
296 |
Q |
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||||||||||| |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21131829 |
gctgacttgatcgtcagtgctagaaaccgaagagtgtgttcatctctaatatcggaattgaattccataaatgccaacaattcttgtgttgggtcggtcc |
21131928 |
T |
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| Q |
297 |
atccaaagcttctctttagcagaatac |
323 |
Q |
| |
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|||||||||||||||||||| |||||| |
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| T |
21131929 |
atccaaagcttctctttagccgaatac |
21131955 |
T |
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