View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18530_low_7 (Length: 344)

Name: NF18530_low_7
Description: NF18530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18530_low_7
NF18530_low_7
[»] chr3 (6 HSPs)
chr3 (57-328)||(34726106-34726378)
chr3 (1-54)||(46595795-46595848)
chr3 (3-54)||(30766053-30766104)
chr3 (22-54)||(37267567-37267599)
chr3 (1-54)||(4865124-4865177)
chr3 (1-54)||(55041525-55041578)
[»] chr7 (3 HSPs)
chr7 (1-54)||(20389918-20389971)
chr7 (1-54)||(5790571-5790624)
chr7 (1-59)||(13946646-13946704)
[»] chr6 (6 HSPs)
chr6 (1-54)||(4434991-4435044)
chr6 (1-54)||(11178362-11178415)
chr6 (1-54)||(28057050-28057103)
chr6 (1-59)||(4091336-4091394)
chr6 (1-54)||(2314487-2314540)
chr6 (1-54)||(32444478-32444531)
[»] chr5 (4 HSPs)
chr5 (1-54)||(37720034-37720087)
chr5 (1-50)||(9263664-9263713)
chr5 (5-53)||(30441319-30441367)
chr5 (22-54)||(41290053-41290085)
[»] chr1 (5 HSPs)
chr1 (4-59)||(25867301-25867356)
chr1 (1-54)||(16961678-16961731)
chr1 (22-59)||(29395483-29395520)
chr1 (1-54)||(35161958-35162011)
chr1 (22-54)||(17962971-17963003)
[»] chr4 (2 HSPs)
chr4 (1-53)||(47520776-47520828)
chr4 (3-54)||(7131306-7131357)
[»] chr8 (2 HSPs)
chr8 (22-53)||(11075265-11075296)
chr8 (1-59)||(1662597-1662655)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 57 - 328
Target Start/End: Original strand, 34726106 - 34726378
Alignment:
Q  57 attgttttccttctctgctattatgctgagattaagaggcctgcaccgtgttcattttcttgtgatgctgtaaccacattccaatttttcatgggttata 156  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34726106 attgttttccttctctgctattatgctgagattaagaggccttcaccgtgttcattttcttgtgatgctgtaaccacattccaatttttcatgggttata 34726205  T
Q  157 ttttggctatattctttataactatataatgccacatggaatcatattaaatatacaataacgttatcgattttctaggtatattggtgtagaccaattt 256  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34726206 ttttggctatattttttataactatataatgccacatggaatcatattaaatatacaataacgttatcgattttctaggtatattggtgtagaccaattt 34726305  T
Q  257 aaccagatagtgg-tttctagatattctagccagtctttatactggctaaatttaaaaatcaattgggtaact 328  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34726306 aaccagatactggatttctagatattctagccagtctttatactggctaaatttaaaaatcaattgggtaact 34726378  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 46595795 - 46595848
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595795 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 46595848  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 30766053 - 30766104
Alignment:
Q  3 gattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  30766053 gattagggttttagatgatttgtgtgcattgtagtttaggattagataataa 30766104  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 37267567 - 37267599
Alignment:
Q  22 ttgtttgcattgtagtttaggattagataataa 54  Q
    |||||||||||||||||||||||||||||||||    
T  37267567 ttgtttgcattgtagtttaggattagataataa 37267599  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4865177 - 4865124
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||||||||  |  | |||| ||||||||||||||||||||||||||||    
T  4865177 aggattagggttttgcaattgttgtgtgcattgtagtttaggattagataataa 4865124  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 55041525 - 55041578
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||||||||  |  | |||| ||||||||||||||||||||||||||||    
T  55041525 aggattagggttttgcaattgttgtgtgcattgtagtttaggattagataataa 55041578  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20389971 - 20389918
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20389971 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 20389918  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5790571 - 5790624
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||||||||||| ||||||||| |||||||||| | |||||||||||||    
T  5790571 aggattagggttttagaagttttgtttacattgtagttcatgattagataataa 5790624  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13946704 - 13946646
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataaagatt 59  Q
    ||||||||||||||  |  | |||| |||||||||||||||||||||||||||| ||||    
T  13946704 aggattagggttttgcaattgttgtgtgcattgtagtttaggattagataataaggatt 13946646  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4435044 - 4434991
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435044 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 4434991  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11178415 - 11178362
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11178415 aggattagggtttttgatgttttgtttgcattgtagtttaggattagataataa 11178362  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28057103 - 28057050
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28057103 aggattagggttttagatgttttgtttgcactgtagtttaggattagataataa 28057050  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4091394 - 4091336
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataaagatt 59  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  4091394 aggattagggttttgcatgttttgtttgcattgtagtttaggattagataataaggatt 4091336  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2314487 - 2314540
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  2314487 aggattaggatttttgatgttttgtttgcattgtagtttaggattagataataa 2314540  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32444531 - 32444478
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  32444531 aggattagggtttttaatgttttgtttgcattgtagtttaggattagataataa 32444478  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37720034 - 37720087
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37720034 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 37720087  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 9263664 - 9263713
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagata 50  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  9263664 aggattaggatttttgatgttttgtttgcattgtagtttaggattagata 9263713  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 30441319 - 30441367
Alignment:
Q  5 ttagggttttagatgttttgtttgcattgtagtttaggattagataata 53  Q
    ||||||||||||| || |||| |||||||||  ||||||||||||||||    
T  30441319 ttagggttttagaggtgttgtgtgcattgtacattaggattagataata 30441367  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 41290085 - 41290053
Alignment:
Q  22 ttgtttgcattgtagtttaggattagataataa 54  Q
    |||||| ||||||||||||||||||||||||||    
T  41290085 ttgtttacattgtagtttaggattagataataa 41290053  T

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Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 25867356 - 25867301
Alignment:
Q  4 attagggttttagatgttttgtttgcattgtagtttaggattagataataaagatt 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25867356 attagggttttagatgttttgtttgcattgtagtttaggattagataataaggatt 25867301  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 16961678 - 16961731
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  16961678 aggattagggttttagatgttttgtttacattgtagtttaggattagatgataa 16961731  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 29395483 - 29395520
Alignment:
Q  22 ttgtttgcattgtagtttaggattagataataaagatt 59  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  29395483 ttgtgtgcattgtagtttaggattagataataaggatt 29395520  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35162011 - 35161958
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||||||||  |  | |||| ||||||||||||||||||||||||||||    
T  35162011 aggattagggttttgcaattgttgtgtgcattgtagtttaggattagataataa 35161958  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 17962971 - 17963003
Alignment:
Q  22 ttgtttgcattgtagtttaggattagataataa 54  Q
    |||||||| ||||||||||||||||||||||||    
T  17962971 ttgtttgcgttgtagtttaggattagataataa 17963003  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 47520828 - 47520776
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataata 53  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  47520828 aggattagggttttagatgttttgtttatattgtagtttaggattagataata 47520776  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 7131357 - 7131306
Alignment:
Q  3 gattagggttttagatgttttgtttgcattgtagtttaggattagataataa 54  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  7131357 gattagggttttagatgttttgtttacattgtagtttaggattaggtaataa 7131306  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 11075265 - 11075296
Alignment:
Q  22 ttgtttgcattgtagtttaggattagataata 53  Q
    ||||||||||||||||||||||||||||||||    
T  11075265 ttgtttgcattgtagtttaggattagataata 11075296  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1662597 - 1662655
Alignment:
Q  1 aggattagggttttagatgttttgtttgcattgtagtttaggattagataataaagatt 59  Q
    ||||||||||||||  |  | |||| |||||||||||||||||||||||||||| ||||    
T  1662597 aggattagggttttgcaattgttgtgtgcattgtagtttaggattagataataaggatt 1662655  T

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