View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18531_high_4 (Length: 215)
Name: NF18531_high_4
Description: NF18531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18531_high_4 |
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| [»] scaffold0132 (2 HSPs) |
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Alignment Details
Target: scaffold0132 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 2359 - 2157
Alignment:
| Q |
1 |
cggctgttcttgtggtttcatctttggagcggttttttgttacagttttgtgttttcctggatatcagctgttgttcctggcagtgattaagttttaggt |
100 |
Q |
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| T |
2359 |
cggctgttcttgtggtttcatctttggagcggttttttgttacagttttgtgttttcctggatatcagctgttgttcctggcagtgattaagttttaggt |
2260 |
T |
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| Q |
101 |
ccccacacaactctccaggagggtcaggagctatttctggcagttttgaagttattttagcactcgtgtggggggcagtatgcttttcgggagatggtgc |
200 |
Q |
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| T |
2259 |
ccccacgcaactctccaggagggtcaggagctatttttggcagtgttgaagttattttagcactcgtgtggggggcagtacgcttttcgggagatggtgc |
2160 |
T |
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| Q |
201 |
cta |
203 |
Q |
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||| |
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| T |
2159 |
cta |
2157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 10319 - 10117
Alignment:
| Q |
1 |
cggctgttcttgtggtttcatctttggagcggttttttgttacagttttgtgttttcctggatatcagctgttgttcctggcagtgattaagttttaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10319 |
cggctgttcttgtggtttcatctttggagcggttttttgttacagttttgtgttttcctggatatcagctgttgttcctggcagtgattaagttttaggt |
10220 |
T |
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| Q |
101 |
ccccacacaactctccaggagggtcaggagctatttctggcagttttgaagttattttagcactcgtgtggggggcagtatgcttttcgggagatggtgc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10219 |
ccccacgcaactctccaggagggtcaggagctatttttggcagtgttgaagttattttagcactcgtgtggggggcagtacgcttttcgggagatggtgc |
10120 |
T |
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| Q |
201 |
cta |
203 |
Q |
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||| |
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| T |
10119 |
cta |
10117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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