View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18531_low_3 (Length: 250)
Name: NF18531_low_3
Description: NF18531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18531_low_3 |
 | |
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| [»] scaffold0097 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 21262542 - 21262783
Alignment:
| Q |
1 |
ttcaccagaacgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgccctt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21262542 |
ttcaccataacgtctaaagaagaaagacatcacatgatttctcacattatgtcctaccatctgaagaaattttgctacttgttcctcaatagacgccctt |
21262641 |
T |
|
| Q |
101 |
cgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttccta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21262642 |
cgtgtatgtgtaagtccaccgcgatctcgtaataagatgcacaagtttaagaaagctttgggactcatacgaattatatcataacatcgatcacttccta |
21262741 |
T |
|
| Q |
201 |
taatatgtttcattagctcatttctaactctctccctatgct |
242 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21262742 |
taatatgtttcattacctcatttctaactctctccctatgct |
21262783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 20300 - 20541
Alignment:
| Q |
1 |
ttcaccagaacgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgccctt |
100 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||||||||||| || |||||||| || ||||||||||||| |||||||||||||| ||||| || ||| |
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|
| T |
20300 |
ttcacctgagcgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctctt |
20399 |
T |
|
| Q |
101 |
cgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttccta |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
20400 |
cgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactaccta |
20499 |
T |
|
| Q |
201 |
taatatgtttcattagctcatttctaactctctccctatgct |
242 |
Q |
| |
|
| |||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
20500 |
ttatatgtttcattagttcgttcctaactttctctctatgct |
20541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 22530163 - 22530404
Alignment:
| Q |
1 |
ttcaccagaacgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgccctt |
100 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||||||||||| || |||||||| || ||||||||||||| |||||||||||||| ||||| || ||| |
|
|
| T |
22530163 |
ttcacctgagcgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctctt |
22530262 |
T |
|
| Q |
101 |
cgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttccta |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
22530263 |
cgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactaccta |
22530362 |
T |
|
| Q |
201 |
taatatgtttcattagctcatttctaactctctccctatgct |
242 |
Q |
| |
|
| |||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
22530363 |
ttatatgtttcattagttcgttcctaactttctctctatgct |
22530404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 22534848 - 22535089
Alignment:
| Q |
1 |
ttcaccagaacgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgccctt |
100 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||||||||||| || |||||||| || ||||||||||||| |||||||||||||| ||||| || ||| |
|
|
| T |
22534848 |
ttcacctgagcgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctctt |
22534947 |
T |
|
| Q |
101 |
cgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttccta |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
22534948 |
cgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactaccta |
22535047 |
T |
|
| Q |
201 |
taatatgtttcattagctcatttctaactctctccctatgct |
242 |
Q |
| |
|
| |||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
22535048 |
ttatatgtttcattagttcgttcctaactttctctctatgct |
22535089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 25992772 - 25993013
Alignment:
| Q |
1 |
ttcaccagaacgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgccctt |
100 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||||||||||| || |||||||| || ||||||||||||| |||||||||||||| ||||| || ||| |
|
|
| T |
25992772 |
ttcacctgagcgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctctt |
25992871 |
T |
|
| Q |
101 |
cgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttccta |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
25992872 |
cgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactaccta |
25992971 |
T |
|
| Q |
201 |
taatatgtttcattagctcatttctaactctctccctatgct |
242 |
Q |
| |
|
| |||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
25992972 |
ttatatgtttcattagttcgttcctaactttctctctatgct |
25993013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33092403 - 33092162
Alignment:
| Q |
1 |
ttcaccagaacgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgccctt |
100 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||||||||||| || |||||||| || ||||||||||||| |||||||||||||| ||||| || ||| |
|
|
| T |
33092403 |
ttcacctgagcgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctctt |
33092304 |
T |
|
| Q |
101 |
cgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttccta |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
33092303 |
cgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactaccta |
33092204 |
T |
|
| Q |
201 |
taatatgtttcattagctcatttctaactctctccctatgct |
242 |
Q |
| |
|
| |||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
33092203 |
ttatatgtttcattagttcgttcctaactttctctctatgct |
33092162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 13190592 - 13190833
Alignment:
| Q |
1 |
ttcaccagaacgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgccctt |
100 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||||||||||| ||||||||||| || ||||||||||||| |||||||||||||| ||||| || ||| |
|
|
| T |
13190592 |
ttcacctgagcgtctaaagaagaaggacaacacacgatttctgacattatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctctt |
13190691 |
T |
|
| Q |
101 |
cgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttccta |
200 |
Q |
| |
|
| |||||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
13190692 |
catgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactaccta |
13190791 |
T |
|
| Q |
201 |
taatatgtttcattagctcatttctaactctctccctatgct |
242 |
Q |
| |
|
| |||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
13190792 |
ttatatgtttcattagttcgttcctaactttctctctatgct |
13190833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 20984493 - 20984252
Alignment:
| Q |
1 |
ttcaccagaacgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgccctt |
100 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||||||||||| || |||||||| || ||||||||||||| |||||||||||||| ||||| || ||| |
|
|
| T |
20984493 |
ttcacctgagcgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctctt |
20984394 |
T |
|
| Q |
101 |
cgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttccta |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
20984393 |
cgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactaccta |
20984294 |
T |
|
| Q |
201 |
taatatgtttcattagctcatttctaactctctccctatgct |
242 |
Q |
| |
|
| |||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
20984293 |
ttatatgtttcattagttcgttcctaactttctctctatgct |
20984252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 49367241 - 49367482
Alignment:
| Q |
1 |
ttcaccagaacgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgccctt |
100 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||||||||||| || |||||||| || ||||||||||||| |||||||||||||| ||||| || ||| |
|
|
| T |
49367241 |
ttcacctgagcgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctctt |
49367340 |
T |
|
| Q |
101 |
cgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttccta |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||| |||| |
|
|
| T |
49367341 |
cgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacaaattatatcataacatcggtcactaccta |
49367440 |
T |
|
| Q |
201 |
taatatgtttcattagctcatttctaactctctccctatgct |
242 |
Q |
| |
|
| |||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
49367441 |
ttatatgtttcattagttcgttcctaactttctctctatgct |
49367482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 20716462 - 20716703
Alignment:
| Q |
1 |
ttcaccagaacgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgccctt |
100 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||||||||||| || |||||||| || ||||||||||||| |||||||||||||| ||||| || ||| |
|
|
| T |
20716462 |
ttcacctgagcgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctctt |
20716561 |
T |
|
| Q |
101 |
cgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttccta |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
20716562 |
cgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactaccta |
20716661 |
T |
|
| Q |
201 |
taatatgtttcattagctcatttctaactctctccctatgct |
242 |
Q |
| |
|
| |||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
20716662 |
ttatatgtttcattagttcgttcctaactttctctctatgct |
20716703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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