View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18531_low_5 (Length: 229)
Name: NF18531_low_5
Description: NF18531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18531_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 9788527 - 9788719
Alignment:
| Q |
15 |
caaaggctaagccaaaacaaacacaatgacagtcctgcaagctaactaaatcccttaggataactcagacactgctacaactaccatacacagaaagcaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9788527 |
caaaggctaagccaaaacaaacacaatgacagtcctgcaagctaactaaatcccttaggataactcagacactgctacaactaccatacgcagaaagcaa |
9788626 |
T |
|
| Q |
115 |
agtcaagtctctaaccacaaaccaggagacaaattccaaccaaaattctgtccaaatgagagccacaactatccctatagcaaacatgttaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
9788627 |
agtcaagtctctaaccacaaaccaggagacaaattccaaccaaaattctgtccaaatgagagccacaactatgcatatagcaaacatgttaat |
9788719 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 3587780 - 3587674
Alignment:
| Q |
105 |
cagaaagcaaagtcaagtctctaaccacaaaccaggagacaaattccaaccaaaattctgtccaaatgagagccacaactatccctatagcaaacatgtt |
204 |
Q |
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||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
3587780 |
cagaaagcaaagtcaagtctctaaccataaaccaggaaataaattccaaccaaaattctgttcaaatgagagccacaactatccctatagcaaacatatt |
3587681 |
T |
|
| Q |
205 |
aatatat |
211 |
Q |
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||||||| |
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| T |
3587680 |
aatatat |
3587674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 3589265 - 3589193
Alignment:
| Q |
15 |
caaaggctaagccaaaacaaacacaatgacagtcctgcaagctaactaaatcccttaggataactcagacact |
87 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3589265 |
caaaggctaagccaaaacaaacacaatgacagtcctgcaagctaactaaatcccttaggataactcagacact |
3589193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 10013394 - 10013590
Alignment:
| Q |
15 |
caaaggctaagccaaaacaaacacaatgacagtcctgcaagctaactaaatcccttaggataactcagacactgctacaactaccatacacagaaagcaa |
114 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10013394 |
caaaggctaagccaaaacaaacacaatgacagtcctgcaagctaactgaatccattaggataactcagacactgctacaactaccatacgcagaaagcaa |
10013493 |
T |
|
| Q |
115 |
agtcaagtctctaaccacaaaccaggagacaaattccaaccaaaattctgtccaaatgagagccacaactatccctatagcaaacatgttaatatat |
211 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
10013494 |
agtcaagtctctaactacaaaccaggagacaaattccaaccaaaattctgtccaaatgagagccacaattatcccaatagcaaacatgttaatatat |
10013590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 10020535 - 10020731
Alignment:
| Q |
15 |
caaaggctaagccaaaacaaacacaatgacagtcctgcaagctaactaaatcccttaggataactcagacactgctacaactaccatacacagaaagcaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10020535 |
caaaggctaagccaaaacaaacacaatgacagtcctgcaagctaactgaatccattaggataactcagacactgctacaactaccatacgcagaaagcaa |
10020634 |
T |
|
| Q |
115 |
agtcaagtctctaaccacaaaccaggagacaaattccaaccaaaattctgtccaaatgagagccacaactatccctatagcaaacatgttaatatat |
211 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
10020635 |
agtcaagtctctaactacaaaccaggagacaaattccaaccaaaattctgtccaaatgagagccacaattatcccaatagcaaacatgttaatatat |
10020731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 44505673 - 44505477
Alignment:
| Q |
15 |
caaaggctaagccaaaacaaacacaatgacagtcctgcaagctaactaaatcccttaggataactcagacactgctacaactaccatacacagaaagcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44505673 |
caaaggctaagccaaaacaaacacaatggtagttctgcaagctaactaaatcccttaggataactcagacactgctacaactaccatacgcagaaagcaa |
44505574 |
T |
|
| Q |
115 |
agtcaagtctctaaccacaaaccaggagacaaattccaaccaaaattctgtccaaatgagagccacaactatccctatagcaaacatgttaatatat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44505573 |
agtcaagtctctaaccacaaaccaggagacaaattctaaccaaaattctgtccagatgagagccacaactatccatatagcaaacatgttaatatat |
44505477 |
T |
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