View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18532_high_12 (Length: 411)
Name: NF18532_high_12
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 23 - 383
Target Start/End: Complemental strand, 48159575 - 48159215
Alignment:
| Q |
23 |
ttgttggactatatttaagaaagaatgaggtagcagagaaaagtgaagaagtactgcacttcccaaataatttgagaaatgaattgattatctttattat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48159575 |
ttgttggactatatttaagaaagaatgaggtagcagagaaaagtgaagaagtactgcacttcccaaataatttgagaaatgaattgattatctttattat |
48159476 |
T |
|
| Q |
123 |
ttggtgatttgagtgaatttagtgtatttgtgagataaatgatgaatgattaaaatagactgtttaaatcagaatgaatgatttgttaaaaaatgagata |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48159475 |
ttggtgatttgagtgaatttagtgtatttgtgagataaatgatgaatgattaaaatagactgtttaaatcagaatgaatgatttgttaaaaaatgagata |
48159376 |
T |
|
| Q |
223 |
agagataaatttaccaaactcaccaaaattcaaagtaaacaaataatttgtatatgatgaacaatggtgttttagttgttattatttgattgattgatgt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48159375 |
agagataaatttaccaaactcaccaaaattcaaagtaaacaaataatttgtatatgatgaacaatggtgttttagttgttattatttgattgattgatgt |
48159276 |
T |
|
| Q |
323 |
aatagtacgtgaaattattggaaggagcatacttcaagttcaactggtcatttattaagta |
383 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48159275 |
aattgtacgtgaaattattggaaggagcatacgtcaagttcaactggtcatttattaagta |
48159215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University