View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18532_high_13 (Length: 408)
Name: NF18532_high_13
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 119 - 390
Target Start/End: Original strand, 9606232 - 9606503
Alignment:
| Q |
119 |
ttttgatttgaactgaggaacaaaggagggagtgaagaaggacaacgttaatgtttggtttggtttgatttagtcgtaggatgttttaagatgatgacac |
218 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9606232 |
ttttgatttgaactgaggaacaa-ggagggagtgaag---gacaacgttaatgtttggtttggtttgatttagtcgtaggatgttttaagatgatgacac |
9606327 |
T |
|
| Q |
219 |
gtggcggatgattagataagttatttttggcgctgttccaattcaaattttgttcatgtgttataggagcggcttgattgcgtgatatttgggatgttat |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9606328 |
gtggcagatgattagataagttatttttggcgctgttccaattcaaattttgttcatgtgttataggagcggcttgattgcgtgatatttgggatgttat |
9606427 |
T |
|
| Q |
319 |
ctttggaatttggaggtactaaagttataaaaatg----gtaagtgccaatcagccagttagtgatgtactgtttt |
390 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9606428 |
ctttggaatttggagatactaaagttataaaaatggtaagtaagtgccaatcagccagttagtgatgtactgtttt |
9606503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 9606136 - 9606214
Alignment:
| Q |
17 |
tgatgaagttgttgaagaacgtgaatcgtaggaactgtatcttgaagagggtttcttagaaaatgaaaacgccatttgc |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9606136 |
tgatgaagttgttgaagaacgtgaatcgtaggaactgtatcttgaagagggtttcttagaaaatgaaaacgccatttgc |
9606214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 11429309 - 11429358
Alignment:
| Q |
25 |
ttgttgaagaacgtgaatcgtaggaactgtatcttgaagagggtttctta |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11429309 |
ttgttgaagaacgtgaatcgtaggaactgtatcatgaagagggtttctta |
11429358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University