View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_high_14 (Length: 405)
Name: NF18532_high_14
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 43079148 - 43078766
Alignment:
| Q |
11 |
cagagagacccaacatgtacagttaaaattaaggacaaatatctttttccattnnnnnnnncgccaagacacaagttgttgagaaaatgctattatgtgc |
110 |
Q |
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| T |
43079148 |
cagagagacccaacatgtacagttaaaattaaggacaaatatctttttccattaaaaaaaacgccaatacacaagttgttgagaaaatgctattatgtgc |
43079049 |
T |
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| Q |
111 |
attttagttttactactaaatttatgaatgcaatgagtcatgagaatccggagttcagtctggggtaggtaaagtctcatcaagaattgaactcaggttc |
210 |
Q |
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| T |
43079048 |
attttagttttactactatatttatgaatgcaatgagtcatgagaatccggagttcagtatgggataggtaaagtctcatcaagaattgaagtcaggttc |
43078949 |
T |
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| Q |
211 |
tcttctacattttgtcattgatggagcttattcatttaata------tatacataaaaaattggtcacatgagaaaatcattctcatttcctcttaattc |
304 |
Q |
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| T |
43078948 |
tcttctacaatttgtcattgatggagcttattcatttaatatatatatatacataaaaaattggtcacatgagaaaatcaatctcatttcctctcaattc |
43078849 |
T |
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| Q |
305 |
aaaagaaagaattaatccactcagatccatcaacataattgagtgaaataaatggtttagcctcctcatcagtgagttccctt |
387 |
Q |
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| T |
43078848 |
aaaagaaagaattaatccactcagacccatcaacataattgagtgaaataaatggtttagcctcctcatcagtgagttccctt |
43078766 |
T |
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